ViewGene

Locus Name:
GeneID:
Location:

GeneID:5336
TrivialName: PA14_33880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33880
PAO1 Ortholog Locus:PA2380
Sequence Length:237
Protein Length:78
Start: 3010594
Stop: 3010830
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05768.1|AE004664_5 (AE004664) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 78/78 (100%), Positives = 78/78 (100%)
Sequence:
ATGGCGTTAGAACCTTCCGATGTTTTGCTCGAATCGGTGTTTTGTCAGCTGGATGCCGACACCCCGCGTTCC
CTCCATGATCTCAAGGGCGACCCCAGGGCCAACCTGCTGGCGATCCGCCTGCTGTTCCGCCAGGGCCGCATC
ACCGGCGTGCTGCTGGACGACCCCAGCGGTGCCGAGGACCAGCATGGGCCGTTGATCTACCACGCCGAGCGC
CTGCGCGTGCGGCGCGGCTAG
Translation:
MALEPSDVLLESVFCQLDADTPRSLHDLKGDPRANLLAIRLLFRQGRITGVLLDDPSGAEDQHGPLIYHAER
LRVRRG*
AnnotationID:5341GeneID:5336
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 18:06:25
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2380
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10672
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27820
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5336

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7732 PA2380_tr translation of PA2380 78 99.99 99.99 0 401.0
196048 gb|AAG05768.1|AE004664_5 (AE004664) hypothetical protein PA2380 [Pseudomonas aeruginosa PAO1] 78 99.99 99.99 0 401.0
GC ORFID: 48338How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2380Glimmer Score:
Start: 1943322Stop: 1943086
Length: 237
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2380 translation of PA2380Homolog Bit Score 159.0
Other Homologs: t_PA2380 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGTTAGAACCTTCCGATGTTTTGCTCGAATCGGTGTTTTGTCAGCTGGATGCCGACACCCCGCGTTCC
CTCCATGATCTCAAGGGCGACCCCAGGGCCAACCTGCTGGCGATCCGCCTGCTGTTCCGCCAGGGCCGCATC
ACCGGCGTGCTGCTGGACGACCCCAGCGGTGCCGAGGACCAGCATGGGCCGTTGATCTACCACGCCGAGCGC
CTGCGCGTGCGGCGCGGCTAG