ViewGene
Locus Name:
GeneID:
Location:

GeneID:5334
TrivialName: PA14_46160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46160
PAO1 Ortholog Locus:PA1414
Sequence Length:234
Protein Length:77
Start: 4105544
Stop: 4105311
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04803.1|AE004571_2 (AE004571) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 77/77 (100%), Positives = 77/77 (100%)
Sequence:
GTGGAACGTGCGGAGAGTGGGACGCCGGTCTACTCTTTCCTAGGGCGACCTGACTTGTCAGGTCGCCCGATT
CTCCTTCCCTTGGACAAGGGGCCTGTCATGAAACTCTGGCTGCAAAACCTGGCGTGGCAACTCGGTGTCGCC
CTTGGCCTGATCGAGCCCCCGCGCATGCAACCCATCCCGGTGGAAAACGACGAGCAACGCCGGCGCCTCGCC
GCGCGGCAACGTCGCTGA
Translation:
MERAESGTPVYSFLGRPDLSGRPILLPLDKGPVMKLWLQNLAWQLGVALGLIEPPRMQPIPVENDEQRRRLA
ARQRR*
AnnotationID:5339GeneID:5334
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 06:06:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1414
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15314




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27816




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5334
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7730
                           PA1414_tr
                           translation of PA1414
                           77
                           99.99
                           99.99
                           0
                           401.0
     

     
     
196046
                           gb|AAG04803.1|AE004571_2
                           (AE004571) hypothetical protein PA1414 [Pseudomonas aeruginosa PAO1]
                           77
                           98.70
                           99.99
                           0
                           398.0
     

     






      

          
GC ORFID: 48336How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1414Glimmer Score: 

          
Start: 848365Stop: 848598

          
Length: 234


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1414 translation of PA1414Homolog Bit Score 159.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGAACGTGCGGAGAGTGGGACGCCGGTCTACTCTTTCCTAGGGCGACCTGACTTGTCAGGTCGCCCGATT 
CTCCTTCCCTTGGACAAGGGGCCTGTCATGAAACTCTGGCTGCAAAACCTGGCGTGGCAACTCGGTGTCGCC 
CTTGGCCTGATCGAGCCCCCGCGCATGCAACCCATCCCGGTGGAAAACGACGAGCAACGCCGGCGCCTCGCC 
GCGCGGCAACGTCGCTGA