ViewGene

Locus Name:
GeneID:
Location:

GeneID:5332
TrivialName: PA14_57820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57820
PAO1 Ortholog Locus:PA4451
Sequence Length:240
Protein Length:79
Start: 5149321
Stop: 5149082
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07839.1|AE004859_8 (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 79/79 (100%), Positives = 79/79 (100%)
Sequence:
ATGCAGGCCGAAGACGTTAAGAGCCTTCTCCAGGAAAAACTCCCCGGCACCCAGGTGGAAGTCGAGGGCGAA
GGGTGCAATTTCCAACTGAATCTGATCAGCGACGAACTGGCCGGCCAGAGCCCGGTCAAGCGTCAGCAGCAG
GTCTACGCCCATTTGAACGCCTGGATCGCCGATGGCAGCATCCATGCCGTCACCATGAAATTCTTCAGCCGC
GCCGCCTGGGCCGAGCGTTCCTGA
Translation:
MQAEDVKSLLQEKLPGTQVEVEGEGCNFQLNLISDELAGQSPVKRQQQVYAHLNAWIADGSIHAVTMKFFSR
AAWAERS*
AnnotationID:5337GeneID:5332
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 06:06:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4451
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5007
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66588.1|AE016286_12 (AE016777) toluene-tolerance protein [Pseudomonas putida KT2440]
          Length = 79

 Score =  137 bits (344), Expect = 2e-32
 Identities = 65/79 (82%), Positives = 73/79 (92%)

>gb|AAO57891.1| (AE016872) toluene tolerance protein, putative [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 79

 Score =  135 bits (341), Expect = 4e-32
 Identities = 65/79 (82%), Positives = 71/79 (89%)
Structural Features:
COG5007, Predicted transcriptional regulator, BolA superfamily 
[Transcription]
CD-Length = 80 residues,  98.8% aligned
Score =  109 bits (273), Expect = 2e-25
Identities = 41/79 (51%), Positives = 57/79 (72%)

Genomic Context:
Comment:
ReferenceID:10664
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27812
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31489
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5332_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5332

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7729 PA4451_tr translation of PA4451 79 99.99 99.99 0 406.0
196041 gb|AAG07839.1|AE004859_8 (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 79 99.99 99.99 0 406.0
196042 gb|AAN66588.1|AE016286_12 (AE016777) toluene-tolerance protein [Pseudomonas putida KT2440] 79 82.27 92.40 0 344.0
196043 gb|AAD17962.1| (AF106002) toluene tolerance protein Ttg2F [Pseudomonas putida] 79 82.27 92.40 0 344.0
196044 gb|AAO57891.1| (AE016872) toluene tolerance protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 79 82.27 89.87 0 341.0
GC ORFID: 48334How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4451Glimmer Score:
Start: 4413000Stop: 4412761
Length: 240
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4451 translation of PA4451Homolog Bit Score 160.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5524 (ORF: BLASTX 137.0), t_PA4451 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGGCCGAAGACGTTAAGAGCCTTCTCCAGGAAAAACTCCCCGGCACCCAGGTGGAAGTCGAGGGCGAA
GGGTGCAATTTCCAACTGAATCTGATCAGCGACGAACTGGCCGGCCAGAGCCCGGTCAAGCGTCAGCAGCAG
GTCTACGCCCATTTGAACGCCTGGATCGCCGATGGCAGCATCCATGCCGTCACCATGAAATTCTTCAGCCGC
GCCGCCTGGGCCGAGCGTTCCTGA