ViewGene
Locus Name:
GeneID:
Location:

GeneID:5331
TrivialName: PA14_56910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56910
PAO1 Ortholog Locus:PA4377
Sequence Length:243
Protein Length:80
Start: 5072956
Stop: 5072714
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07765.1|AE004854_1 (AE004854) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 80/80 (100%), Positives = 80/80 (100%)
Sequence:
ATGAAATTAGAAATCACTCGAGGTTTGTTGCTGGTCGGCGCTCTCGCCGTGGCTACAGCCGCGGCTGCCGCC
TGGCACGAACCCGCGCCGAACGTGGTGCAGATGAGCGGCGGTCATGAGTACTGCCCGACACCTTCGGCGCTC
AAGGCCGAGCGGCCGACGCGCCAGGAGGTCCAGCCGAACAAGGACATCCTGCTGCTGATGTTCGGTCTTTCC
CAGGGGGGAGCCAGCCTGTCGCGCTGA
Translation:
MKLEITRGLLLVGALAVATAAAAAWHEPAPNVVQMSGGHEYCPTPSALKAERPTRQEVQPNKDILLLMFGLS
QGGASLSR*
AnnotationID:5336GeneID:5331
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 07:07:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4377
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10662




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27810




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5331
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7728
                           PA4377_tr
                           translation of PA4377
                           80
                           99.99
                           99.99
                           0
                           406.0
     

     
     
196040
                           gb|AAG07765.1|AE004854_1
                           (AE004854) hypothetical protein PA4377 [Pseudomonas aeruginosa PAO1]
                           80
                           99.99
                           99.99
                           0
                           406.0
     

     






      

          
GC ORFID: 48333How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4377Glimmer Score: 

          
Start: 4336632Stop: 4336390

          
Length: 243


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4377 translation of PA4377Homolog Bit Score 160.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAATTAGAAATCACTCGAGGTTTGTTGCTGGTCGGCGCTCTCGCCGTGGCTACAGCCGCGGCTGCCGCC 
TGGCACGAACCCGCGCCGAACGTGGTGCAGATGAGCGGCGGTCATGAGTACTGCCCGACACCTTCGGCGCTC 
AAGGCCGAGCGGCCGACGCGCCAGGAGGTCCAGCCGAACAAGGACATCCTGCTGCTGATGTTCGGTCTTTCC 
CAGGGGGGAGCCAGCCTGTCGCGCTGA