ViewGene
Locus Name:
GeneID:
Location:

GeneID:5330
TrivialName: PA14_46390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46390
PAO1 Ortholog Locus:PA1394
Sequence Length:255
Protein Length:84
Start: 4127785
Stop: 4127531
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04783.1|AE004569_1 (AE004569) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 78/84 (92%), Positives = 79/84 (94%)
Sequence:
ATGACTCGGCAATCCGTACTCGCCACCGGCCCGGAGGCCAGCGATTGGTGGTGCTTCGGCAGCGGCGACGAG
CCGGCGCGCGAGTCGTTCTCTGCCGGTGGGCGTTCGCTGGCGGCGTCGAGAAAGCCTGCCGCCGCACCGCGC
GGAATGGCCGTGGGCGAGCAGGCGAACCGCGCGCAAGCGTCCGGGCAGGACGCCGCGCCGGGCCTGCGAGCC
TTCGACCTGCTGCCTGGCAACCCGCCGAAGAACCCCTAG
Translation:
MTRQSVLATGPEASDWWCFGSGDEPARESFSAGGRSLAASRKPAAAPRGMAVGEQANRAQASGQDAAPGLRA
FDLLPGNPPKNP*
AnnotationID:5335GeneID:5330
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 21:09:04
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1394
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10660




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27808




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5330
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7727
                           PA1394_tr
                           translation of PA1394
                           84
                           92.85
                           94.04
                           0
                           405.0
     

     
     
196039
                           gb|AAG04783.1|AE004569_1
                           (AE004569) hypothetical protein PA1394 [Pseudomonas aeruginosa PAO1]
                           84
                           92.85
                           94.04
                           0
                           405.0
     

     






      

          
GC ORFID: 48332How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1394Glimmer Score: 

          
Start: 826124Stop: 826378

          
Length: 255


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1394 translation of PA1394Homolog Bit Score 160.0

          
Other Homologs:  t_PA1394 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCGGCAATCCGTACTCGCCACCGGCCCGGAGGCCAGCGATTGGTGGTGCTTCGGCAGCGGCGACGAG 
CCGGCGCGCGAGTCGTTCTCTGCCGGTGGGCGTTCGCTGGCGGCGTCGAGAAAGCCTGCCGCCGCACCGCGC 
GGAATGGCCGTGGGCGAGCAGGCGAACCGCGCGCAAGCGTCCGGGCAGGACGCCGCGCCGGGCCTGCGAGCC 
TTCGACCTGCTGCCTGGCAACCCGCCGAAGAACCCCTAG