ViewGene
Locus Name:
GeneID:
Location:

GeneID:533
TrivialName: PA14_31680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31680
PAO1 Ortholog Locus:PA2543
Sequence Length:1740
Protein Length:579
Start: 2751825
Stop: 2753564
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05931.1|AE004682_3 (AE004682) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 577/579 (99%), Positives = 578/579 (99%)
Sequence:
ATGAGACTGACTCAAGGATTGTTCCGGTTCCCGCTGGCCGGGCTGCTGTGCCTGAGTACGGCCGCCTTCGCG
GAGAGCCAGCTTAGCGTGCGCGTCACCCCCGCCAATGCCGCCCTGAAGGCCAATATCGAGGCCTATGTGGGT
AGCCTCGGCGAGCGGGACGAAGCGGCGTTGCAACGTTTCCGCCGCAATGCCGAAGCGCAGGCGGAAAAGGCG
GCCcagGCGCTCGGCTACTTCCAGGCGCAGATCGACAGCGAGGTGAAGGACGGCAAGCCGCCGAAGCTCACG
CTCAAGGTAGTGCCCGGCGAGCCCGTGCGCCTGCGCCAGGTGAATATCCAGGTGCTCGGCGAGGCCGCCAGC
CTGGAGAGCTTCCGCTTGCCGTCGGGCAAGCAACTGAAACCGGGCGCGAAGCTGAACCAGGGCGTCTACGAG
GACGCCAAGCGGCTGATCCAGAACCAGGCCTCGCGCTACGGCTTCTTCCAGGGCCGCTTCAGCACCCAGCGC
CTGAGCATCGATCCGCGCGCCGGCATCGCCGACATCGACCTGGTCTACGACAGCGGCCAGCGCTACACCTTC
GGCAAGGTGAGCTTCGACGGCGACTCGATCATCGAGGAAGAACTGTTGCGCCGCATGGTGCCGTTCAAGGCC
GGCCAACCCTATGACTCCGAACTGATCGCCGAACTCAACCAGAACCTGCAATCCAGCGGCTACTTCGAGGGC
GTGCGGGTCGACGCCGCGCCGACCCAGGCGCAGGCCGACGGCGCGCGCCAGGCGATCCCGGTAGCGGTCCGG
CTGGAGGCGCGCAAGCCCCGGACCATGGGCGTCGGCCTCGGCTTCTCGACCGACGTCGGGGCGCGCGCGAGG
TTCAACTGGACCCGCCATTGGGTGAATGCCGAAGGGCATAGCCTGGGATTCGAGTCGGAAATCTCCGCACCA
CGGCAGAACGTCGGCGCCTGGTACGAGATTCCCCTCGATCCGCCGCTCACCGACAAGCTGCGCTTCACCAGC
GGCTACCAGTTCGAAGACCTGGTCGACACCGAGAGCAAGCTGCTGACCCTTGGCGGCGAATGGCACAGCAAG
CAGCCCGGTGGCTGGCAGCGGGTGGTTTCGCTGAACTGGATGCGCGAGGAGTACAAGCTGGGCGACGACTCC
GGGCTGAGCAGCTTCCTGATGCCGGGGATCGGCTACTCGCTGCTGGAGACCGACAACAAGGTCGACCCCAGC
CATGGCTACCGCCTGCAGTTCAACGTCAAGGGGGCGAAGGAAGGCCTGCTGGCCGACGCCGACGTCCTCCAT
GTCGACGCCATGGCCAAGGGCCTGACCAGCTTCGCCGGCGGCCATCGCCTGCTCGGCCGCCTGCAGGTAGGC
GGAATCGCCACCAACGACTACAAGTCGATCCCGCCCTCGCTGCGCTTCTTCGCCGGCGGCGACCAGAGCGTG
CGTGGCTACGACTACCGGACGCTGTCGCCGGAGAATTCCGATGGCGACAAGATCGGCGGCCGCTACATGATC
GCCGGCAGCGTCGAGTATCAATATCCGCTGGCCGAGCGCTGGCGCCTGGCGACCTTCGTCGACCAGGGCAAC
GCCTTCAACTCGCTGGACTTCCCGTCGATCAAGACCGGGGTCGGCTTCGGCGTGCGCTGGGTCTCGCCGGTC
GGCCCGTTGCGCCTCGACCTGGCCCATGCGCTCGACGACGATGGCGGTTTCCGCCTGCACTTCTCCATGGGG
CCAGAACTGTGA
Translation:
MRLTQGLFRFPLAGLLCLSTAAFAESQLSVRVTPANAALKANIEAYVGSLGERDEAALQRFRRNAEAQAEKA
AQALGYFQAQIDSEVKDGKPPKLTLKVVPGEPVRLRQVNIQVLGEAASLESFRLPSGKQLKPGAKLNQGVYE
DAKRLIQNQASRYGFFQGRFSTQRLSIDPRAGIADIDLVYDSGQRYTFGKVSFDGDSIIEEELLRRMVPFKA
GQPYDSELIAELNQNLQSSGYFEGVRVDAAPTQAQADGARQAIPVAVRLEARKPRTMGVGLGFSTDVGARAR
FNWTRHWVNAEGHSLGFESEISAPRQNVGAWYEIPLDPPLTDKLRFTSGYQFEDLVDTESKLLTLGGEWHSK
QPGGWQRVVSLNWMREEYKLGDDSGLSSFLMPGIGYSLLETDNKVDPSHGYRLQFNVKGAKEGLLADADVLH
VDAMAKGLTSFAGGHRLLGRLQVGGIATNDYKSIPPSLRFFAGGDQSVRGYDYRTLSPENSDGDKIGGRYMI
AGSVEYQYPLAERWRLATFVDQGNAFNSLDFPSIKTGVGFGVRWVSPVGPLRLDLAHALDDDGGFRLHFSMG
PEL*
AnnotationID:542GeneID:533
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:00
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:PA2543
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0729
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO09222.1|AE016799_120 (AE016799) Outer membrane protein [Vibrio vulnificus CMCP6]
          Length = 571

 Score =  365 bits (937), Expect = e-100
 Identities = 212/559 (37%), Positives = 307/559 (54%), Gaps = 10/559 (1%)






 
Structural Features:
COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]
CD-Length = 594 residues,  99.3% aligned
Score =  488 bits (1257), Expect = 8e-139
Identities = 241/593 (40%), Positives = 331/593 (55%), Gaps = 17/593 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1069




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18211




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33101




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:533_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:533
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
930
                           PA2543_tr
                           translation of PA2543
                           579
                           99.65
                           99.82
                           0
                           2988.0
     

     
     
37423
                           gb|AAG05931.1|AE004682_3
                           (AE004682) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           579
                           99.65
                           99.82
                           0
                           2988.0
     

     
     
37424
                           gb|AAO56250.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           584
                           67.12
                           80.30
                           15
                           2108.0
     

     
     
37425
                           gb|AAN68500.1|AE016482_2
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           593
                           66.77
                           80.60
                           24
                           2100.0
     

     






      

          
GC ORFID: 43535How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2543Glimmer Score: 

          
Start: 2202101Stop: 2200362

          
Length: 1740


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2543 translation of PA2543Homolog Bit Score 1155.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8130 (ORF: BLASTX 818.0), t_PA2543 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGACTGACTCAAGGATTGTTCCGGTTCCCGCTGGCCGGGCTGCTGTGCCTGAGTACGGCCGCCTTCGCG 
GAGAGCCAGCTTAGCGTGCGCGTCACCCCCGCCAATGCCGCCCTGAAGGCCAATATCGAGGCCTATGTGGGT 
AGCCTCGGCGAGCGGGACGAAGCGGCGTTGCAACGTTTCCGCCGCAATGCCGAAGCGCAGGCGGAAAAGGCG 
GCCcagGCGCTCGGCTACTTCCAGGCGCAGATCGACAGCGAGGTGAAGGACGGCAAGCCGCCGAAGCTCACG 
CTCAAGGTAGTGCCCGGCGAGCCCGTGCGCCTGCGCCAGGTGAATATCCAGGTGCTCGGCGAGGCCGCCAGC 
CTGGAGAGCTTCCGCTTGCCGTCGGGCAAGCAACTGAAACCGGGCGCGAAGCTGAACCAGGGCGTCTACGAG 
GACGCCAAGCGGCTGATCCAGAACCAGGCCTCGCGCTACGGCTTCTTCCAGGGCCGCTTCAGCACCCAGCGC 
CTGAGCATCGATCCGCGCGCCGGCATCGCCGACATCGACCTGGTCTACGACAGCGGCCAGCGCTACACCTTC 
GGCAAGGTGAGCTTCGACGGCGACTCGATCATCGAGGAAGAACTGTTGCGCCGCATGGTGCCGTTCAAGGCC 
GGCCAACCCTATGACTCCGAACTGATCGCCGAACTCAACCAGAACCTGCAATCCAGCGGCTACTTCGAGGGC 
GTGCGGGTCGACGCCGCGCCGACCCAGGCGCAGGCCGACGGCGCGCGCCAGGCGATCCCGGTAGCGGTCCGG 
CTGGAGGCGCGCAAGCCCCGGACCATGGGCGTCGGCCTCGGCTTCTCGACCGACGTCGGGGCGCGCGCGAGG 
TTCAACTGGACCCGCCATTGGGTGAATGCCGAAGGGCATAGCCTGGGATTCGAGTCGGAAATCTCCGCACCA 
CGGCAGAACGTCGGCGCCTGGTACGAGATTCCCCTCGATCCGCCGCTCACCGACAAGCTGCGCTTCACCAGC 
GGCTACCAGTTCGAAGACCTGGTCGACACCGAGAGCAAGCTGCTGACCCTTGGCGGCGAATGGCACAGCAAG 
CAGCCCGGTGGCTGGCAGCGGGTGGTTTCGCTGAACTGGATGCGCGAGGAGTACAAGCTGGGCGACGACTCC 
GGGCTGAGCAGCTTCCTGATGCCGGGGATCGGCTACTCGCTGCTGGAGACCGACAACAAGGTCGACCCCAGC 
CATGGCTACCGCCTGCAGTTCAACGTCAAGGGGGCGAAGGAAGGCCTGCTGGCCGACGCCGACGTCCTCCAT 
GTCGACGCCATGGCCAAGGGCCTGACCAGCTTCGCCGGCGGCCATCGCCTGCTCGGCCGCCTGCAGGTAGGC 
GGAATCGCCACCAACGACTACAAGTCGATCCCGCCCTCGCTGCGCTTCTTCGCCGGCGGCGACCAGAGCGTG 
CGTGGCTACGACTACCGGACGCTGTCGCCGGAGAATTCCGATGGCGACAAGATCGGCGGCCGCTACATGATC 
GCCGGCAGCGTCGAGTATCAATATCCGCTGGCCGAGCGCTGGCGCCTGGCGACCTTCGTCGACCAGGGCAAC 
GCCTTCAACTCGCTGGACTTCCCGTCGATCAAGACCGGGGTCGGCTTCGGCGTGCGCTGGGTCTCGCCGGTC 
GGCCCGTTGCGCCTCGACCTGGCCCATGCGCTCGACGACGATGGCGGTTTCCGCCTGCACTTCTCCATGGGG 
CCAGAACTGTGA