ViewGene
Locus Name:
GeneID:
Location:

GeneID:5329
TrivialName: PA14_54730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54730
PAO1 Ortholog Locus:PA0738
Sequence Length:246
Protein Length:81
Start: 4852725
Stop: 4852480
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04127.1|AE004509_2 (AE004509) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 81/81 (100%), Positives = 81/81 (100%)
Sequence:
ATGAGTCATTTTCTGTCGTTCGCCAAGGGCGCCCTGGCGATGTTCTGGCTCGTCGCGCTGGTCAACCTGGCC
TACCCGCTGGGCGAGTTGCATCGACCGATCCTGCTGTTGTCCGGCGTGCTGGTGCTGGTCCATGCCGCCGAG
ATCCTGCTGCTCAACGGGCGTCTCAAGGCGCGCCCGGCACCTTGGCTGGAGCGCCTCCAGGTGCTGCTGTTC
GGCGTCCTGCACCTGCGTAGCCTCGGCTGA
Translation:
MSHFLSFAKGALAMFWLVALVNLAYPLGELHRPILLLSGVLVLVHAAEILLLNGRLKARPAPWLERLQVLLF
GVLHLRSLG*
AnnotationID:5334GeneID:5329
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0738
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3776, Predicted membrane protein [Function unknown] Score: 69.1, 2e-13
pfam06611, DUF1145, Protein of unknown function (DUF1145). Thi... Score: 67.5, 6e-13







   
Genomic Context:






   
Comment:


















    ReferenceID:10658




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27806




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5329
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7726
                           PA0738_tr
                           translation of PA0738
                           81
                           99.99
                           99.99
                           0
                           406.0
     

     
     
196037
                           gb|AAG04127.1|AE004509_2
                           (AE004509) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           81
                           99.99
                           99.99
                           0
                           406.0
     

     
     
196038
                           gb|AAA25990.1|
                           (M86744) 11 kd protein [Pseudomonas sp.]
                           82
                           63.41
                           75.60
                           2
                           269.0
     

     






      

          
GC ORFID: 48331How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0738Glimmer Score: 

          
Start: 101182Stop: 101427

          
Length: 246


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0738 translation of PA0738Homolog Bit Score 160.0

          
Other Homologs:  t_PA0738 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCATTTTCTGTCGTTCGCCAAGGGCGCCCTGGCGATGTTCTGGCTCGTCGCGCTGGTCAACCTGGCC 
TACCCGCTGGGCGAGTTGCATCGACCGATCCTGCTGTTGTCCGGCGTGCTGGTGCTGGTCCATGCCGCCGAG 
ATCCTGCTGCTCAACGGGCGTCTCAAGGCGCGCCCGGCACCTTGGCTGGAGCGCCTCCAGGTGCTGCTGTTC 
GGCGTCCTGCACCTGCGTAGCCTCGGCTGA