ViewGene

Locus Name:
GeneID:
Location:

GeneID:5327
TrivialName: PA14_56670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56670
PAO1 Ortholog Locus:PA4357
Sequence Length:243
Protein Length:80
Start: 5048511
Stop: 5048269
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07745.1|AE004851_13 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 79/80 (98%), Positives = 80/80 (100%)
Sequence:
ATGGCGACACTCATGCAGATCCGCGCCGCCCTGGAAGACGGCCAGGCGCGTGGGCTGAAACAGCTCAGCCGC
CAGGTGGACGCGCCGCCGGCGCTGGTGGAGGCGATCCTGGAGCGGCTGATCGCGCTCGGCAAGGTCGAGCGG
GTGGCTGCGCAAAGCTCGGGCGGTTGCGGCGGCGGTTGCAAGGGCTGCGCCCAGCGCGATCCGTGCGCGGAG
CCGGAGCCGTATTTCCGCCTGCGCTAG
Translation:
MATLMQIRAALEDGQARGLKQLSRQVDAPPALVEAILERLIALGKVERVAAQSSGGCGGGCKGCAQRDPCAE
PEPYFRLR*
AnnotationID:5332GeneID:5327
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 05:05:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4357
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10654
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27802
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5327

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7724 PA4357_tr translation of PA4357 80 98.75 99.99 0 408.0
195996 gb|AAG07745.1|AE004851_13 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 80 98.75 99.99 0 408.0
GC ORFID: 48329How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4357Glimmer Score:
Start: 4312187Stop: 4311945
Length: 243
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4357 translation of PA4357Homolog Bit Score 161.0
Other Homologs: t_PA4357 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGACACTCATGCAGATCCGCGCCGCCCTGGAAGACGGCCAGGCGCGTGGGCTGAAACAGCTCAGCCGC
CAGGTGGACGCGCCGCCGGCGCTGGTGGAGGCGATCCTGGAGCGGCTGATCGCGCTCGGCAAGGTCGAGCGG
GTGGCTGCGCAAAGCTCGGGCGGTTGCGGCGGCGGTTGCAAGGGCTGCGCCCAGCGCGATCCGTGCGCGGAG
CCGGAGCCGTATTTCCGCCTGCGCTAG