ViewGene
Locus Name:
GeneID:
Location:

GeneID:5323
TrivialName: PA14_59120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59120
PAO1 Ortholog Locus:
Sequence Length:240
Protein Length:79
Start: 5264513
Stop: 5264752
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84223.1| (AY273869) hypothetical protein RL098 [Pseudomonas aeruginosa]
Identities = 79/79 (100%), Positives = 79/79 (100%)
Sequence:
ATGTTCTTGAGCATGGCCCCTTTCTTTTTGGTCGTTCTCGTTCTTTCTGCACTTTTTACAGATGCGTGGAAC
GACCGAGAACTCAGGCTGTTGTTAATGCTGATCGTGTTCGGGTATTCAGTAACCGTGTTGACCATTACGGTT
GAGATGTATCGCTTTGAAATGGCGGAAAAAGCGATGTGGGGAGCTTTATGCAACAAAGCCAACTACATGAAC
TGCCAACCAGATTACCAACGGTAG
Translation:
MFLSMAPFFLVVLVLSALFTDAWNDRELRLLLMLIVFGYSVTVLTITVEMYRFEMAEKAMWGALCNKANYMN
CQPDYQR*
AnnotationID:5328GeneID:5323
AnnotatorUID: diggins
Modification Date/Time: 2006-02-05 08:08:03
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10646




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27793




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5323
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
195992
                           gb|AAP84223.1|
                           (AY273869) hypothetical protein RL098 [Pseudomonas aeruginosa]
                           79
                           99.99
                           99.99
                           0
                           411.0
     

     






      

          
GC ORFID: 48325How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL098Glimmer Score: 

          
Start: 4528192Stop: 4528431

          
Length: 240


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL098 79 Homolog: No significant similarity () translation of RL098Homolog Bit Score 162.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTTCTTGAGCATGGCCCCTTTCTTTTTGGTCGTTCTCGTTCTTTCTGCACTTTTTACAGATGCGTGGAAC 
GACCGAGAACTCAGGCTGTTGTTAATGCTGATCGTGTTCGGGTATTCAGTAACCGTGTTGACCATTACGGTT 
GAGATGTATCGCTTTGAAATGGCGGAAAAAGCGATGTGGGGAGCTTTATGCAACAAAGCCAACTACATGAAC 
TGCCAACCAGATTACCAACGGTAG