ViewGene
Locus Name:
GeneID:
Location:

GeneID:5322
TrivialName: PA14_06430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06430
PAO1 Ortholog Locus:PA0493
Sequence Length:249
Protein Length:82
Start: 565534
Stop: 565782
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03882.1|AE004486_11 (AE004486) probable biotin-requiring enzyme [Pseudomonas aeruginosa PAO1]
Identities = 82/82 (100%), Positives = 82/82 (100%)
Sequence:
ATGGCCGAACATAACGTGCAGTCCCCCTTGCCCGGCACCTTCTATCGCAAGGCCAGCCCCGACGCGCCACCC
TACGCGGAGGTCGGGCAGGCGGTCGAGGCCGGCAGCGTGATCGGGCTGATCGAGGTGATGAAGCAGTTTTCC
GAAGTGCAGGCCGGGCAGGCCGGCATACTCCAGGCGTTCCACGTGGAAGATGGCGAGGCCATCGAGCCGGGA
CAGGTGCTGGCGGTGATCGCCAGCGCTACCTGA
Translation:
MAEHNVQSPLPGTFYRKASPDAPPYAEVGQAVEAGSVIGLIEVMKQFSEVQAGQAGILQAFHVEDGEAIEPG
QVLAVIASAT*
AnnotationID:5327GeneID:5322
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:29
Gene Name:
Confidence Code:3
GeneProduct:putative biotin-requiring enzyme
Cell Localization:()
Synonyms:PA0493
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative acetyl-CoA carboxylase, biotin carboxyl carrier protein
Functional Category Confidence Code:5
COGs:pfam00364
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO09692.1|AE016801_11 (AE016801) Biotin carboxyl carrier protein [Vibrio vulnificus
           CMCP6]
          Length = 154

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 36/77 (46%), Positives = 52/77 (67%)

>gb|AAP95559.1| (AE017152) probable biotin carboxyl carrier protein of acetyl-CoA
           carboxylase (BCCP) [Haemophilus ducreyi 35000HP]
          Length = 152

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 34/75 (45%), Positives = 50/75 (66%)

>dbj|BAC61143.1| (AP005083) acetyl-CoA carboxylase, biotin carboxyl carrier protein
           [Vibrio parahaemolyticus]
          Length = 152

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 36/77 (46%), Positives = 51/77 (66%)








 
Structural Features:
pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. 
CD-Length = 73 residues, 100.0% aligned
Score = 52.2 bits (125), Expect = 1e-08
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10644




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27791




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33790




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5322_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5322
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7722
                           PA0493_tr
                           translation of PA0493
                           82
                           99.99
                           99.99
                           0
                           410.0
     

     
     
195991
                           gb|AAG03882.1|AE004486_11
                           (AE004486) probable biotin-requiring enzyme [Pseudomonas aeruginosa PAO1]
                           82
                           99.99
                           99.99
                           0
                           410.0
     

     






      

          
GC ORFID: 48324How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0493Glimmer Score: 

          
Start: 6366876Stop: 6367124

          
Length: 249


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0493 translation of PA0493Homolog Bit Score 162.0

          
Other Homologs:  t_PA0493 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGAACATAACGTGCAGTCCCCCTTGCCCGGCACCTTCTATCGCAAGGCCAGCCCCGACGCGCCACCC 
TACGCGGAGGTCGGGCAGGCGGTCGAGGCCGGCAGCGTGATCGGGCTGATCGAGGTGATGAAGCAGTTTTCC 
GAAGTGCAGGCCGGGCAGGCCGGCATACTCCAGGCGTTCCACGTGGAAGATGGCGAGGCCATCGAGCCGGGA 
CAGGTGCTGGCGGTGATCGCCAGCGCTACCTGA