ViewGene
Locus Name:
GeneID:
Location:

GeneID:5321
TrivialName: PA14_69820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69820
PAO1 Ortholog Locus:PA5289
Sequence Length:261
Protein Length:86
Start: 6226475
Stop: 6226735
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08674.1|AE004941_7 (AE004941) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 86/86 (100%), Positives = 86/86 (100%)
Sequence:
ATGCTGCCGCCCAAAGCCGTCTTCGAAGCCCTCAGCCAACAAGCCAGCCGCCTGTTCGCCGGCGAATCGCCG
TTGCCCAAGGCCGAACTGGAGTCGCAGTTCCGCGCCCTGATGCAGAGCGCTTTCAGCAAGCTCGACCTGGTC
AGCCGCGAGGAATTCGACAGCCAGATGCTGGTCCTCGCCCGCACCCGCGCACGGCTGGAAGCCCTGGAGGCC
AAGGTGGCGGAACTCGAAAGCAAGCTGACGCCGCCCGCCGACTGA
Translation:
MLPPKAVFEALSQQASRLFAGESPLPKAELESQFRALMQSAFSKLDLVSREEFDSQMLVLARTRARLEALEA
KVAELESKLTPPAD*
AnnotationID:5326GeneID:5321
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 09:09:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5289
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10642




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27789




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34785




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5321_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5321
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7721
                           PA5289_tr
                           translation of PA5289
                           86
                           99.99
                           99.99
                           0
                           411.0
     

     
     
195986
                           gb|AAG08674.1|AE004941_7
                           (AE004941) hypothetical protein PA5289 [Pseudomonas aeruginosa PAO1]
                           86
                           99.99
                           99.99
                           0
                           411.0
     

     
     
195988
                           gb|AAP29975.1|
                           (AY214163) hypothetical protein [Pseudomonas putida]
                           88
                           72.72
                           85.22
                           2
                           305.0
     

     
     
195987
                           gb|AAL83552.1|AF414717_2
                           (AF414717) PA5289-like protein [Pseudomonas stutzeri]
                           86
                           70.93
                           84.88
                           0
                           311.0
     

     
     
195989
                           gb|AAN70800.1|AE016723_12
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           88
                           69.31
                           84.09
                           2
                           300.0
     

     






      

          
GC ORFID: 48323How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5289Glimmer Score: 

          
Start: 5490163Stop: 5490423

          
Length: 261


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5289 translation of PA5289Homolog Bit Score 162.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3121 (ORF: BLASTX 114.0)

          
GC ORF Sequence

           
ATGCTGCCGCCCAAAGCCGTCTTCGAAGCCCTCAGCCAACAAGCCAGCCGCCTGTTCGCCGGCGAATCGCCG 
TTGCCCAAGGCCGAACTGGAGTCGCAGTTCCGCGCCCTGATGCAGAGCGCTTTCAGCAAGCTCGACCTGGTC 
AGCCGCGAGGAATTCGACAGCCAGATGCTGGTCCTCGCCCGCACCCGCGCACGGCTGGAAGCCCTGGAGGCC 
AAGGTGGCGGAACTCGAAAGCAAGCTGACGCCGCCCGCCGACTGA