ViewGene
Locus Name:
GeneID:
Location:

GeneID:5320
TrivialName: PA14_27290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27290
PAO1 Ortholog Locus:PA2845
Sequence Length:234
Protein Length:77
Start: 2368830
Stop: 2369063
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06233.1|AE004711_5 (AE004711) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 74/77 (96%), Positives = 75/77 (97%)
Sequence:
ATGAAAGGTCAACAGGATTATTTCGGCAGTCACTGCCACGCTGCATCCCATCCCGCCTCGACCGCTGCGCCG
TCGTTGTGGCGTCGCTGGCGGCGCTGGTTGCAGTTGGCCCGCGAGCGCCGGGAACTGCTGAGGATGAGCGAC
GAAGCGCTGAAGGACCTCGGCCTGAGTCGGGCGGATATCTTCCAAGAGGGCGAGCGGCATTTCTGGGACGAC
CCGCTGCGTCGGCATTGA
Translation:
MKGQQDYFGSHCHAASHPASTAAPSLWRRWRRWLQLARERRELLRMSDEALKDLGLSRADIFQEGERHFWDD
PLRRH*
AnnotationID:5325GeneID:5320
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2845
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10640




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27787




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36174




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5320_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5320
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7720
                           PA2845_tr
                           translation of PA2845
                           77
                           96.10
                           97.40
                           0
                           413.0
     

     
     
195985
                           gb|AAG06233.1|AE004711_5
                           (AE004711) hypothetical protein PA2845 [Pseudomonas aeruginosa PAO1]
                           77
                           96.10
                           97.40
                           0
                           413.0
     

     






      

          
GC ORFID: 48322How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2845Glimmer Score: 

          
Start: 2585097Stop: 2584864

          
Length: 234


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2845 translation of PA2845Homolog Bit Score 163.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAAGGTCAACAGGATTATTTCGGCAGTCACTGCCACGCTGCATCCCATCCCGCCTCGACCGCTGCGCCG 
TCGTTGTGGCGTCGCTGGCGGCGCTGGTTGCAGTTGGCCCGCGAGCGCCGGGAACTGCTGAGGATGAGCGAC 
GAAGCGCTGAAGGACCTCGGCCTGAGTCGGGCGGATATCTTCCAAGAGGGCGAGCGGCATTTCTGGGACGAC 
CCGCTGCGTCGGCATTGA