ViewGene

Locus Name:
GeneID:
Location:

GeneID:5318
TrivialName: PA14_63220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63220
PAO1 Ortholog Locus:PA4782
Sequence Length:246
Protein Length:81
Start: 5642645
Stop: 5642400
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08168.1|AE004891_10 (AE004891) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 81/81 (100%), Positives = 81/81 (100%)
Sequence:
ATGCTGCGGCGCAGCGCCCGGATGGGCCGGGCTGACGGGGGTACGAAGATGAAAGCGCTGGTCATCGGTGTG
GTCCTGGTGTTCCTTGGCGGTTGCGCCAGTCACGTGAGCCCCGGCGGCAAGGCCATCGAGTCGCCGATCAAG
GAGTATTTCGGCCAGGACCCCATCGAGCGCCGGGCCTTCGGCGAGAGCGAGAACGGCGCCGAGGCCGAGGAT
TCGCCACTGCGTTTCCGCCTGACGCCCTGA
Translation:
MLRRSARMGRADGGTKMKALVIGVVLVFLGGCASHVSPGGKAIESPIKEYFGQDPIERRAFGESENGAEAED
SPLRFRLTP*
AnnotationID:5323GeneID:5318
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 07:07:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4782
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10636
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27783
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5318

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7718 PA4782_tr translation of PA4782 81 99.99 99.99 0 414.0
195967 gb|AAG08168.1|AE004891_10 (AE004891) hypothetical protein PA4782 [Pseudomonas aeruginosa PAO1] 81 99.99 99.99 0 414.0
GC ORFID: 48320How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4782Glimmer Score:
Start: 4906325Stop: 4906080
Length: 246
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4782 translation of PA4782Homolog Bit Score 164.0
Other Homologs: t_PA4782 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGCGGCGCAGCGCCCGGATGGGCCGGGCTGACGGGGGTACGAAGATGAAAGCGCTGGTCATCGGTGTG
GTCCTGGTGTTCCTTGGCGGTTGCGCCAGTCACGTGAGCCCCGGCGGCAAGGCCATCGAGTCGCCGATCAAG
GAGTATTTCGGCCAGGACCCCATCGAGCGCCGGGCCTTCGGCGAGAGCGAGAACGGCGCCGAGGCCGAGGAT
TCGCCACTGCGTTTCCGCCTGACGCCCTGA