ViewGene
Locus Name:
GeneID:
Location:

GeneID:5317
TrivialName: PA14_50950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50950
PAO1 Ortholog Locus:PA1034
Sequence Length:201
Protein Length:66
Start: 4526580
Stop: 4526780
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04423.1|AE004536_2 (AE004536) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 66/66 (100%), Positives = 66/66 (100%)
Sequence:
ATGAGTCAGGAACCCCACGTACACGGCCCGAACTGCAACCACGACCACGATCATCATCACGATCATGGCCAT
GGTCATGTCCATGGTCCGCACTGCAACCACAGCCACGAGCCGGTGCGCAATCCGCTCAAGGCCGTAGGCCGC
AACGATCCCTGCCCCTGCGGCAGCGAGAAGAAATTCAAGAAGTGCCACGGCGCCTGA
Translation:
MSQEPHVHGPNCNHDHDHHHDHGHGHVHGPHCNHSHEPVRNPLKAVGRNDPCPCGSEKKFKKCHGA*
AnnotationID:5322GeneID:5317
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 18:06:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1034
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10634




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27781




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5317
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7717
                           PA1034_tr
                           translation of PA1034
                           66
                           99.99
                           99.99
                           0
                           416.0
     

     
     
195965
                           gb|AAG04423.1|AE004536_2
                           (AE004536) hypothetical protein PA1034 [Pseudomonas aeruginosa PAO1]
                           66
                           99.99
                           99.99
                           0
                           416.0
     

     
     
195966
                           gb|AAN66739.1|AE016302_1
                           (AE016778) SEC-C domain protein [Pseudomonas putida KT2440]
                           67
                           83.58
                           89.55
                           3
                           344.0
     

     






      

          
GC ORFID: 48319How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1034Glimmer Score: 

          
Start: 427328Stop: 427128

          
Length: 201


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1034 translation of PA1034Homolog Bit Score 164.0

          
Other Homologs:  t_PA1034 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCAGGAACCCCACGTACACGGCCCGAACTGCAACCACGACCACGATCATCATCACGATCATGGCCAT 
GGTCATGTCCATGGTCCGCACTGCAACCACAGCCACGAGCCGGTGCGCAATCCGCTCAAGGCCGTAGGCCGC 
AACGATCCCTGCCCCTGCGGCAGCGAGAAGAAATTCAAGAAGTGCCACGGCGCCTGA