ViewGene

Locus Name:
GeneID:
Location:

GeneID:5313
TrivialName: PA14_59680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59680
PAO1 Ortholog Locus:
Sequence Length:258
Protein Length:85
Start: 5309848
Stop: 5310105
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84174.1| (AY273869) hypothetical protein RL048 [Pseudomonas aeruginosa]
Identities = 85/85 (100%), Positives = 85/85 (100%)
Sequence:
ATGACTACTCATCTGATCACCCTAGTCATCAAGCAGCCGAGCGACGCTCAGGCACGCCAACTCATGTACCAG
GAGTTGCTCGGACTGATCTCACGCTACGGCGGTGAGGTGACGTCCAAGGCCTTGGAGGACGAGTCGACCCTC
TGCGAGCTGCTGGTGCAGATGCTGCCTGATCATGAGGTAGAGCAAGCCAGGAAACAGGTGCTCGAACTTCAT
GCCAAGGGCCGCCTGCAGGCGCCGGCAAGCCTGAAGGTGTAA
Translation:
MTTHLITLVIKQPSDAQARQLMYQELLGLISRYGGEVTSKALEDESTLCELLVQMLPDHEVEQARKQVLELH
AKGRLQAPASLKV*
AnnotationID:5318GeneID:5313
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 20:08:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10626
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27773
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5313

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
195875 gb|AAP84174.1| (AY273869) hypothetical protein RL048 [Pseudomonas aeruginosa] 85 99.99 99.99 0 419.0
GC ORFID: 48315How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL048Glimmer Score:
Start: 4573527Stop: 4573784
Length: 258
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_RL048 85 Homolog: No significant similarity () translation of RL048Homolog Bit Score 166.0
Other Homologs:
GC ORF Sequence
ATGACTACTCATCTGATCACCCTAGTCATCAAGCAGCCGAGCGACGCTCAGGCACGCCAACTCATGTACCAG
GAGTTGCTCGGACTGATCTCACGCTACGGCGGTGAGGTGACGTCCAAGGCCTTGGAGGACGAGTCGACCCTC
TGCGAGCTGCTGGTGCAGATGCTGCCTGATCATGAGGTAGAGCAAGCCAGGAAACAGGTGCTCGAACTTCAT
GCCAAGGGCCGCCTGCAGGCGCCGGCAAGCCTGAAGGTGTAA