ViewGene
Locus Name:
GeneID:
Location:

GeneID:5312
TrivialName: PA14_71350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71350
PAO1 Ortholog Locus:PA5405
Sequence Length:234
Protein Length:77
Start: 6356438
Stop: 6356671
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08790.1|AE004953_4 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 75/77 (97%), Positives = 76/77 (98%)
Sequence:
ATGAGCCGACGCCTCTTCCCTTTCCTGCCGTTCCTGTTCCTGGTCGGCTGCGCCCAGGGCTATCCCTCCTTC
TCCGGCATCCTTCCGGACGTCCGCGTCAGCGGCGACGAACGCAGCTACGCCGAGCGCGCCGATGACTGCCTG
AAGCGGCGCAACTGCCCGCCGGCCACCGATCGCGATCCCTTCGTCGCCGACCCCGGGCACTACTCGCTGGGC
GGCAGCTTTCACTGGTGA
Translation:
MSRRLFPFLPFLFLVGCAQGYPSFSGILPDVRVSGDERSYAERADDCLKRRNCPPATDRDPFVADPGHYSLG
GSFHW*
AnnotationID:5317GeneID:5312
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:36
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5405
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10624




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27771




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5312
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7713
                           PA5405_tr
                           translation of PA5405
                           77
                           97.40
                           98.70
                           0
                           419.0
     

     
     
195874
                           gb|AAG08790.1|AE004953_4
                           (AE004953) hypothetical protein PA5405 [Pseudomonas aeruginosa PAO1]
                           77
                           97.40
                           98.70
                           0
                           419.0
     

     






      

          
GC ORFID: 48314How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5405Glimmer Score: 

          
Start: 5620127Stop: 5620360

          
Length: 234


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5405 translation of PA5405Homolog Bit Score 166.0

          
Other Homologs:  t_PA5405 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGACGCCTCTTCCCTTTCCTGCCGTTCCTGTTCCTGGTCGGCTGCGCCCAGGGCTATCCCTCCTTC 
TCCGGCATCCTTCCGGACGTCCGCGTCAGCGGCGACGAACGCAGCTACGCCGAGCGCGCCGATGACTGCCTG 
AAGCGGCGCAACTGCCCGCCGGCCACCGATCGCGATCCCTTCGTCGCCGACCCCGGGCACTACTCGCTGGGC 
GGCAGCTTTCACTGGTGA