ViewGene

Locus Name:
GeneID:
Location:

GeneID:5310
TrivialName: PA14_26300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26300
PAO1 Ortholog Locus:PA2919
Sequence Length:258
Protein Length:85
Start: 2295027
Stop: 2294770
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06307.1|AE004718_4 (AE004718) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 81/85 (95%), Positives = 84/85 (98%)
Sequence:
ATGCACGTGACCCTGGTAATCGCCGGCGGGATCATCCTGCTCGGCCTGTTCCTGCTCTTCGGCGAACTCTGG
GAGGCCGGGCCGGCGCCCGCTGCCGGCCTGTTCCTGCCGACCTGGCTGGCCGTCGCGCTGGTCAACCTGTGG
GTCGGCGTCCAGCACGCCGGCTACGGCTTGCGCGAAGAACTGCCGATCCTGCTGCTGGTCTTCCTGGTCCCG
GCGGCCCTGGCCGGCGTAGCGATCTGGCTGGCGCCGCGCTAG
Translation:
MHVTLVIAGGIILLGLFLLFGELWEAGPAPAAGLFLPTWLAVALVNLWVGVQHAGYGLREELPILLLVFLVP
AALAGVAIWLAPR*
AnnotationID:5315GeneID:5310
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2919
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10620
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27767
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5310

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7711 PA2919_tr translation of PA2919 85 95.29 98.82 0 419.0
195859 gb|AAG06307.1|AE004718_4 (AE004718) hypothetical protein PA2919 [Pseudomonas aeruginosa PAO1] 85 95.29 98.82 0 419.0
GC ORFID: 48312How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2919Glimmer Score:
Start: 2658898Stop: 2659155
Length: 258
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2919 translation of PA2919Homolog Bit Score 166.0
Other Homologs: t_PA2919 (ORF: GLIMMER)
GC ORF Sequence
ATGCACGTGACCCTGGTAATCGCCGGCGGGATCATCCTGCTCGGCCTGTTCCTGCTCTTCGGCGAACTCTGG
GAGGCCGGGCCGGCGCCCGCTGCCGGCCTGTTCCTGCCGACCTGGCTGGCCGTCGCGCTGGTCAACCTGTGG
GTCGGCGTCCAGCACGCCGGCTACGGCTTGCGCGAAGAACTGCCGATCCTGCTGCTGGTCTTCCTGGTCCCG
GCGGCCCTGGCCGGCGTAGCGATCTGGCTGGCGCCGCGCTAG