ViewGene
Locus Name:
GeneID:
Location:

GeneID:5309
TrivialName: PA14_27870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27870
PAO1 Ortholog Locus:PA2805
Sequence Length:264
Protein Length:87
Start: 2413937
Stop: 2413674
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06193.1|AE004707_12 (AE004707) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 87/87 (100%), Positives = 87/87 (100%)
Sequence:
ATGCCGAAAGAGAGTCTGCTGCGCGAACTGTCCGCCCTGCGCGAGCAACTGGAGCAACAACCGCCGCTGAAC
GAAGAGCAGCGCGCCGAACTGGAACTCCTGATCAGGGACATCGAACTGAAACTGGCCAACGAGGACGCCCTC
AACGAAGGCAGCCTGGTCGATGGGGTCAACCTCGCCGTCGAGCGCTTCGAGGTCAGCCACCCGACCCTCGCC
GGCACGCTCCGCTCCATCGTGCAGAGCCTGGCCAACATGGGAATCTGA
Translation:
MPKESLLRELSALREQLEQQPPLNEEQRAELELLIRDIELKLANEDALNEGSLVDGVNLAVERFEVSHPTLA
GTLRSIVQSLANMGI*
AnnotationID:5314GeneID:5309
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 08:08:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2805
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10618




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27765




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36227




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5309_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5309
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7710
                           PA2805_tr
                           translation of PA2805
                           87
                           99.99
                           99.99
                           0
                           420.0
     

     
     
195858
                           gb|AAG06193.1|AE004707_12
                           (AE004707) hypothetical protein PA2805 [Pseudomonas aeruginosa PAO1]
                           87
                           99.99
                           99.99
                           0
                           420.0
     

     






      

          
GC ORFID: 48311How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2805Glimmer Score: 

          
Start: 2539989Stop: 2540252

          
Length: 264


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2805 translation of PA2805Homolog Bit Score 166.0

          
Other Homologs:  t_PA2805 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGAAAGAGAGTCTGCTGCGCGAACTGTCCGCCCTGCGCGAGCAACTGGAGCAACAACCGCCGCTGAAC 
GAAGAGCAGCGCGCCGAACTGGAACTCCTGATCAGGGACATCGAACTGAAACTGGCCAACGAGGACGCCCTC 
AACGAAGGCAGCCTGGTCGATGGGGTCAACCTCGCCGTCGAGCGCTTCGAGGTCAGCCACCCGACCCTCGCC 
GGCACGCTCCGCTCCATCGTGCAGAGCCTGGCCAACATGGGAATCTGA