ViewGene

Locus Name:
GeneID:
Location:

GeneID:5308
TrivialName: PA14_41610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41610
PAO1 Ortholog Locus:PA1774
Sequence Length:255
Protein Length:84
Start: 3715351
Stop: 3715097
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05163.1|AE004603_3 (AE004603) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 83/84 (98%), Positives = 83/84 (98%)
Sequence:
GTGTGCATGCACGATCCGTTCGAAGAGTCCCTGCGGGACCTGCTCAAGGCTTCGGCTCCCCAGCCGGACGAC
GACGCGCGTCTGGGACGGGTGCTGAAGACCGCCAATCGCCAGGTTGGCGCCGGTGACCTGTTCAGCCTCATG
GGGCACTGGCTGCAGGCGCTGATGATCGGCATCAACAACGGTTCGCCGCATCTGGCGCCGGTTTCCCGTATT
TCCGCGAAAAACGCATCTTCTGCTGACAAGGCTGAGTGA
Translation:
MCMHDPFEESLRDLLKASAPQPDDDARLGRVLKTANRQVGAGDLFSLMGHWLQALMIGINNGSPHLAPVSRI
SAKNASSADKAE*
AnnotationID:5313GeneID:5308
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 09:09:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:crfX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67700.1|AE016401_3 (AE016781) crfX protein [Pseudomonas putida KT2440]
          Length = 90

 Score =  114 bits (285), Expect = 1e-25
 Identities = 59/87 (67%), Positives = 68/87 (78%), Gaps = 5/87 (5%)

>gb|AAO55810.1| (AE016864) crfX protein [Pseudomonas syringae pv. tomato str.
          DC3000]
          Length = 82

 Score =  114 bits (284), Expect = 2e-25
 Identities = 55/82 (67%), Positives = 65/82 (79%)

>gb|AAD45974.1|AF115334_1 (AF115334) CrfX [Pseudomonas fluorescens]
          Length = 81

 Score =  110 bits (276), Expect = 1e-24
 Identities = 56/82 (68%), Positives = 65/82 (79%), Gaps = 1/82 (1%)

Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15308
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27763
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5308

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7709 PA1774_tr translation of PA1774 84 98.80 98.80 0 420.0
195853 gb|AAG05163.1|AE004603_3 (AE004603) hypothetical protein PA1774 [Pseudomonas aeruginosa PAO1] 84 97.61 98.80 0 417.0
195854 gb|AAD11569.1| (AF027290) hypothetical protein [Pseudomonas aeruginosa] 84 97.61 97.61 2 419.0
195855 gb|AAN67700.1|AE016401_3 (AE016781) crfX protein [Pseudomonas putida KT2440] 92 67.39 75.00 10 290.0
195857 gb|AAD45974.1|AF115334_1 (AF115334) CrfX [Pseudomonas fluorescens] 84 66.66 77.38 3 278.0
GC ORFID: 48310How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1774Glimmer Score:
Start: 1238558Stop: 1238812
Length: 255
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1774 translation of PA1774Homolog Bit Score 166.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1070 (ORF: BLASTX 114.0), t_PA1774 (ORF: GLIMMER)
GC ORF Sequence
GTGTGCATGCACGATCCGTTCGAAGAGTCCCTGCGGGACCTGCTCAAGGCTTCGGCTCCCCAGCCGGACGAC
GACGCGCGTCTGGGACGGGTGCTGAAGACCGCCAATCGCCAGGTTGGCGCCGGTGACCTGTTCAGCCTCATG
GGGCACTGGCTGCAGGCGCTGATGATCGGCATCAACAACGGTTCGCCGCATCTGGCGCCGGTTTCCCGTATT
TCCGCGAAAAACGCATCTTCTGCTGACAAGGCTGAGTGA