ViewGene
Locus Name:
GeneID:
Location:

GeneID:5307
TrivialName: PA14_44270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44270
PAO1 Ortholog Locus:PA1564
Sequence Length:240
Protein Length:79
Start: 3939001
Stop: 3938762
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04953.1|AE004585_1 (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 79/79 (100%), Positives = 79/79 (100%)
Sequence:
ATGACCCATTCTGTCGACGCCATTCTCGACGCCACCGGCCTGAACTGTCCCGAGCCGGTGATGATGCTGCAC
AACAAGGTCCGCGACCTGGCGCCCGGCGGCCTGCTCAAGGTGATCGCCACCGATCCCTCGACCCGCCGCGAC
ATCCCCAAGTTCTGCGTGTTCCTCGGTCACGAGCTGGTCGAGCAGCAGGAAGAGGCGGGCACCTATCTCTAC
TGGATCCGCAAGAAGGCCGACTAG
Translation:
MTHSVDAILDATGLNCPEPVMMLHNKVRDLAPGGLLKVIATDPSTRRDIPKFCVFLGHELVEQQEEAGTYLY
WIRKKAD*
AnnotationID:5312GeneID:5307
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 12:12:30
Gene Name:
Confidence Code:3
GeneProduct:putative redox protein
Cell Localization:()
Synonyms:PA1564
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0425
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55536.1| (AE016863) SirA protein. putative [Pseudomonas syringae pv.
          tomato str. DC3000]
          Length = 84

 Score =  132 bits (331), Expect = 6e-31
 Identities = 62/76 (81%), Positives = 67/76 (88%)








 
Structural Features:
COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 78 residues,  96.2% aligned
Score = 88.0 bits (218), Expect = 2e-19
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10614




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27761




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36502




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5307_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5307
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7708
                           PA1564_tr
                           translation of PA1564
                           79
                           99.99
                           99.99
                           0
                           420.0
     

     
     
195850
                           gb|AAG04953.1|AE004585_1
                           (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           79
                           99.99
                           99.99
                           0
                           420.0
     

     
     
195851
                           gb|AAN67729.1|AE016404_4
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           80
                           83.75
                           91.25
                           1
                           347.0
     

     
     
195852
                           gb|AAO55536.1|
                           (AE016863) SirA protein. putative [Pseudomonas syringae pv. tomato str. DC3000]
                           84
                           73.80
                           80.95
                           5
                           327.0
     

     






      

          
GC ORFID: 48309How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1564Glimmer Score: 

          
Start: 1014908Stop: 1015147

          
Length: 240


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1564 translation of PA1564Homolog Bit Score 166.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene836 (ORF: BLASTX 132.0), t_PA1564 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCATTCTGTCGACGCCATTCTCGACGCCACCGGCCTGAACTGTCCCGAGCCGGTGATGATGCTGCAC 
AACAAGGTCCGCGACCTGGCGCCCGGCGGCCTGCTCAAGGTGATCGCCACCGATCCCTCGACCCGCCGCGAC 
ATCCCCAAGTTCTGCGTGTTCCTCGGTCACGAGCTGGTCGAGCAGCAGGAAGAGGCGGGCACCTATCTCTAC 
TGGATCCGCAAGAAGGCCGACTAG