ViewGene

Locus Name:
GeneID:
Location:

GeneID:5306
TrivialName: PA14_45950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45950
PAO1 Ortholog Locus:PA1431
Sequence Length:243
Protein Length:80
Start: 4085107
Stop: 4085349
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04820.1|AE004572_8 (AE004572) regulatory protein RsaL [Pseudomonas aeruginosa PAO1]
Identities = 80/80 (100%), Positives = 80/80 (100%)
Sequence:
ATGGCTTCACACGAGAGAACACAGCCCCAAAACATGGCCTTCCGGGCAAAGGCCACCCGCACCGCCCGACGG
GAAAGCCAGGAAACTTTCTGGAGCCGCTTCGGGATAAGCCAATCCTGCGGCAGTCGTTTCGAGAATGGCGAG
AACCTGCCCTTCCCTATATACCTGCTTTTGCATTTCTATATAGAAGGGCAAATTACCGATCGCCAGCTCGCC
GACCTGAGAGGCAAGATCAGAGAGTAA
Translation:
MASHERTQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFPIYLLLHFYIEGQITDRQLA
DLRGKIRE*
AnnotationID:5311GeneID:5306
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 07:07:43
Gene Name:rsaL
Confidence Code:1
GeneProduct:regulatory protein RsaL
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAM75412.1| (AY115588) probable regulator protein RsaL [Pseudomonas putida]
          Length = 76

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10612
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27759
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37994
Author/Investigator(s): de Kievit T, Seed PC, Nezezon J, Passador L, Iglewski BH.
Title: RsaL, a novel repressor of virulence gene expression in Pseudomonas aeruginosa.
PubMed: 10094696
MedLine:
Source:
J Bacteriol. 1999 Apr;181(7):2175-84.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=10094696
Homologs By Global Alignment
Gene ID:5306

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7707 PA1431_tr translation of PA1431 80 99.99 99.99 0 419.0
195848 gb|AAG04820.1|AE004572_8 (AE004572) regulatory protein RsaL [Pseudomonas aeruginosa PAO1] 80 99.99 99.99 0 419.0
195849 gb|AAD22496.1| (M59425) virulence gene repressor RsaL [Pseudomonas aeruginosa] 80 99.99 99.99 0 419.0
GC ORFID: 48308How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1431Glimmer Score:
Start: 868802Stop: 868560
Length: 243
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1431 translation of PA1431Homolog Bit Score 166.0
Other Homologs:
GC ORF Sequence
ATGGCTTCACACGAGAGAACACAGCCCCAAAACATGGCCTTCCGGGCAAAGGCCACCCGCACCGCCCGACGG
GAAAGCCAGGAAACTTTCTGGAGCCGCTTCGGGATAAGCCAATCCTGCGGCAGTCGTTTCGAGAATGGCGAG
AACCTGCCCTTCCCTATATACCTGCTTTTGCATTTCTATATAGAAGGGCAAATTACCGATCGCCAGCTCGCC
GACCTGAGAGGCAAGATCAGAGAGTAA