ViewGene
Locus Name:
GeneID:
Location:

GeneID:5305
TrivialName: PA14_53680
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53680
PAO1 Ortholog Locus:
Sequence Length:234
Protein Length:77
Start: 4761493
Stop: 4761260
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04208.1|AE004517_3 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 68/78 (87%), Positives = 71/78 (91%), Gaps = 1/78 (1%)
Sequence:
CTGCGACGCACCTCGCAATGCAACCAGCATCCCGGCTGCGCCACCCTCTACCTGGACTGCAGCGCAGCCAGC
GAAGACCTGTTCGACACCGCCCGCCGCCCTCTGGAGTCGGCGATCGGAACGCTGAGCGTCCTCGACCTGCTC
GACGAAACCGAAGACCGGCGAAAGCACCGCCGCATCACCGGCTCCTTGCTGTCGCTGTTCGAGGCGGAATAC
GCACGCAGACACCGATAA
Translation:
MRRTSQCNQHPGCATLYLDCSAASEDLFDTARRPLESAIGTLSVLDLLDETEDRRKHRRITGSLLSLFEAEY
ARRHR*
AnnotationID:5310GeneID:5305
AnnotatorUID: danlee
Modification Date/Time: 2006-07-03 13:01:49
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Only 71.13% identical with PAO1 PA0819. 






 
Structural Features:






   
Genomic Context:






   
Comment:
Single nucleotide substitution in PA14 sequence where PAO1 start codon is located 
(resulting in a later translation start site).  Also, a -1 frame-shift, followed by a -2 frame-shift
results a stretch of ~7 aa substitution.  (6-30-04)


















    ReferenceID:15306




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27757




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5305
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7705
                           PA0819_tr
                           translation of PA0819
                           97
                           71.13
                           73.19
                           20
                           335.0
     

     
     
195846
                           gb|AAG04208.1|AE004517_3
                           (AE004517) hypothetical protein PA0819 [Pseudomonas aeruginosa PAO1]
                           97
                           71.13
                           73.19
                           20
                           335.0
     

     
     
7706
                           PA1362_tr
                           translation of PA1362
                           107
                           64.48
                           66.35
                           30
                           316.0
     

     
     
195847
                           gb|AAG04751.1|AE004565_10
                           (AE004565) hypothetical protein PA1362 [Pseudomonas aeruginosa PAO1]
                           107
                           64.48
                           66.35
                           30
                           316.0
     

     






      

          
GC ORFID: 48307How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0819Glimmer Score: 

          
Start: 192414Stop: 192647

          
Length: 234


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0819 translation of PA0819Homolog Bit Score 166.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGCGACGCACCTCGCAATGCAACCAGCATCCCGGCTGCGCCACCCTCTACCTGGACTGCAGCGCAGCCAGC 
GAAGACCTGTTCGACACCGCCCGCCGCCCTCTGGAGTCGGCGATCGGAACGCTGAGCGTCCTCGACCTGCTC 
GACGAAACCGAAGACCGGCGAAAGCACCGCCGCATCACCGGCTCCTTGCTGTCGCTGTTCGAGGCGGAATAC 
GCACGCAGACACCGATAA