ViewGene
Locus Name:
GeneID:
Location:

GeneID:5303
TrivialName: PA14_17350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17350
PAO1 Ortholog Locus:PA3632
Sequence Length:249
Protein Length:82
Start: 1490715
Stop: 1490467
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07020.1|AE004783_5 (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 81/82 (98%), Positives = 81/82 (98%)
Sequence:
ATGAGCCAGCCCGACAAACCGACCCTGTCGCTTGACCTGCGCGGCGAACATTGCCCGTACAACGCCATCGCC
ACCCTGGAAACCCTGGCGACCATGCAGCCGGGCGAACGCCTGGAAGTGGTCACCGACTGCTCGCAGTCGGTC
CACGGGATTCCCGAAGACACCCAGCGCCAGGGCTACAAATGCCTGGCGGTGGAGCAGCACGGCGCGCTGTTC
CGCTTCCTCATAGAGGTGCCGCTGGAAAGCTGA
Translation:
MSQPDKPTLSLDLRGEHCPYNAIATLETLATMQPGERLEVVTDCSQSVHGIPEDTQRQGYKCLAVEQHGALF
RFLIEVPLES*
AnnotationID:5308GeneID:5303
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 20:08:38
Gene Name:
Confidence Code:3
GeneProduct:putative redox protein
Cell Localization:()
Synonyms:PA3632
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0425
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 78 residues,  97.4% aligned
Score = 78.8 bits (194), Expect = 2e-16
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10606




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27753




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31911




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5303_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5303
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7704
                           PA3632_tr
                           translation of PA3632
                           82
                           98.78
                           98.78
                           0
                           423.0
     

     
     
195843
                           gb|AAG07020.1|AE004783_5
                           (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           82
                           98.78
                           98.78
                           0
                           423.0
     

     
     
195844
                           emb|CAD85946.1|
                           (BX321863) Uncharacterized protein family UPF0033 [Nitrosomonas europaea ATCC 19718]
                           82
                           69.51
                           79.26
                           2
                           298.0
     

     






      

          
GC ORFID: 48305How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3632Glimmer Score: 

          
Start: 3463222Stop: 3463470

          
Length: 249


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3632 translation of PA3632Homolog Bit Score 167.0

          
Other Homologs:  t_PA3632 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGCCCGACAAACCGACCCTGTCGCTTGACCTGCGCGGCGAACATTGCCCGTACAACGCCATCGCC 
ACCCTGGAAACCCTGGCGACCATGCAGCCGGGCGAACGCCTGGAAGTGGTCACCGACTGCTCGCAGTCGGTC 
CACGGGATTCCCGAAGACACCCAGCGCCAGGGCTACAAATGCCTGGCGGTGGAGCAGCACGGCGCGCTGTTC 
CGCTTCCTCATAGAGGTGCCGCTGGAAAGCTGA