ViewGene
Locus Name:
GeneID:
Location:

GeneID:530
TrivialName: PA14_57100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57100
PAO1 Ortholog Locus:PA4393
Sequence Length:1785
Protein Length:594
Start: 5085962
Stop: 5087746
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07781.1|AE004855_3 (AE004855) probable permease [Pseudomonas aeruginosa PAO1]
Identities = 593/594 (99%), Positives = 593/594 (99%)
Sequence:
ATGACTCAGCAATCCTGGCGAGAGGCTCTGGTCGCCTACAAGTCTCCCGCCAGCCTGGCCCTCCTGCTGCTC
GGCTTCGCCGCCGGCCTGCCGACCATGCTGGTGTTCAACACCCTGTCGGTGTGGCTGCGCGAAGCCGGCGTG
GCGCGGGATACCATCGGTTTCGCCAGTTGGCTGGGGCTGGTGTACGCCTTCAAGTGGGTCTGGTCGCCGATG
CTCGACCAGTGGCGCCTGCCCTTCGTCGGCCGTCTCGGCCGGCGCCGTTCCTGGCTGGTGTTCTCGCAGGTG
CTGATCGCCCTGGGACTGCTCGGCATGGCCCTGTGCAATCCGCAGAGCCACCTGCCCTGGCTGATCGGCCTG
GCCCTGCTGGTGGCGTTCGCCTCCGCCACCCAGGACATCGCGATCGACGCCTACCGCCTGGAAATCGCCGAG
GATAGCCGCCAGGCCGCCCTCGCTGCCTGCTACATGACCGGCTACCGCGCGGCGATCCTGCTGGCCAGCGCC
GGCGCGCTGATTCTCGCCGAATGGTTCGGCTCCACCAGCCTCAACTACAGCCAATCGGCCTGGGGCCTGACC
TATGCGTTGTTCGCCCTGCTGATCCTGCCTGGGCTGGTCACCAGCCTGCTGATCCGCGAGCCGGCGGTGGAC
GTGCCGATCCACGTCAACCCGTCGCGTTTCGACTTCAACCACCAACTGCTCTCGGTGCTCCTGCTGCTGATC
CTGCTGATCTCGCTGCCGGCGATGATCACCGCCCTCCTCGACCGCGCCTGGCCGCGCGCCGGCCTCTACGCG
CTGCTCATGGGGATCTGCCTGTCGCCGTGGGGACGCCAGCAGATCCGCCCGGTCCGCGAACTGCTCGCCACC
GTGCGCAGGCCGCTGCTGGTGGCGGCGCGCGGCAAGGAAGTGCCGCTGTTCGATTTCGTCCACCAGGCGGTC
TCGGTGATGGTGCTGATCATCCTCCTCGTCACCGTCACCGCCATGTGCCGCGCCTACTACTCCGGTGCCTGG
CCGCGCGGCACGCTGTTCCTGCTGATCGCCGCGTCCTGCCTGTCGGCACCCGGGCGCCTGCTGATGGCCCCG
GTGCTGACGCCGATCACCGAGTTCGTCCAGCGTTATCGCTGGCAGGCCCTGCTGCTGCTCGGCCTGATCTCC
ACCTATCGCCTGTCGGACACGGTGATGGGGGTGATGGCCGGGGTCTTCTACATCGACATGGGCTTCTCCAAG
GAAGTCATCGCCAGTGTCAGCAAGGTCTTCGGCGTACTCATGACCCTGATCGGCGCCGCCGCCGGCGGGGTG
CTGATCGCCCGCTTCAGCATCCTCTCCATCCTGTTCATCGGCGGTGCCGCTTCGGCTGCCACCAACCTGCTG
TTCGCCATGCTCGCCCAGCTCGGCCCGCTGCACGCCGAGGCCCTGCCCAGCCATGACGTGATCAGCCTGGTG
ATGGCGCTCGAGCCGCACGTGCTGATGCTGGTGATGACCATCACCCTCGACAACTTCAGCGGCGGCCTCGCC
GCCTCGGCCTTCGTCGCCTACCTGTCGAGCCTGACCAACCTGAAGTTCTCCGCCACCCAGTACGCCATGCTC
AGCTCGACCATGCTCCTGCTGCCGCGCTTCATCGGCGGCTACTCCGGAACCATGGTCGAGAGCCTCGGCTAC
GAGCACTTCTTCTACGTCACCGCGGTGATGGGCATTCCCACCCTGCTGCTGATCGGCTGGTTGTGGCTGCGC
CGCGCGCCGTCCAGCGAGACGCCGGCGCCGGGTCACCAGAACGCCGAGCAGCACTGA
Translation:
MTQQSWREALVAYKSPASLALLLLGFAAGLPTMLVFNTLSVWLREAGVARDTIGFASWLGLVYAFKWVWSPM
LDQWRLPFVGRLGRRRSWLVFSQVLIALGLLGMALCNPQSHLPWLIGLALLVAFASATQDIAIDAYRLEIAE
DSRQAALAACYMTGYRAAILLASAGALILAEWFGSTSLNYSQSAWGLTYALFALLILPGLVTSLLIREPAVD
VPIHVNPSRFDFNHQLLSVLLLLILLISLPAMITALLDRAWPRAGLYALLMGICLSPWGRQQIRPVRELLAT
VRRPLLVAARGKEVPLFDFVHQAVSVMVLIILLVTVTAMCRAYYSGAWPRGTLFLLIAASCLSAPGRLLMAP
VLTPITEFVQRYRWQALLLLGLISTYRLSDTVMGVMAGVFYIDMGFSKEVIASVSKVFGVLMTLIGAAAGGV
LIARFSILSILFIGGAASAATNLLFAMLAQLGPLHAEALPSHDVISLVMALEPHVLMLVMTITLDNFSGGLA
ASAFVAYLSSLTNLKFSATQYAMLSSTMLLLPRFIGGYSGTMVESLGYEHFFYVTAVMGIPTLLLIGWLWLR
RAPSSETPAPGHQNAEQH*
AnnotationID:539GeneID:530
AnnotatorUID: diggins
Modification Date/Time: 2005-05-23 06:06:50
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:(5) Inner membrane-associated
Synonyms:ampG
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative MFS protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57833.1| (AE016871) ampG protein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 516

 Score =  467 bits (1201), Expect = e-130
 Identities = 283/606 (46%), Positives = 356/606 (58%), Gaps = 119/606 (19%)

>gb|AAN66978.1|AE016326_4 (AE016779) muropeptide permease AmpG [Pseudomonas putida KT2440]
          Length = 515

 Score =  463 bits (1192), Expect = e-129
 Identities = 280/613 (45%), Positives = 353/613 (57%), Gaps = 119/613 (19%)

>gb|AAN56794.1|AE015814_14 (AE015814) ampG protein, putative [Shewanella oneidensis MR-1]
          Length = 461

 Score =  217 bits (553), Expect = 1e-55
 Identities = 110/210 (52%), Positives = 149/210 (70%), Gaps = 1/210 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1063




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:20161




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:530_cdd.html


    		




 
URL:

















    ReferenceID:38156




  
Author/Investigator(s):
        Lindquist S, Weston-Hafer K, Schmidt H, Pul C, Korfmann G, Erickson J, Sanders C, Martin HH, Normark S.





  
Title:
        AmpG, a signal transducer in chromosomal beta-lactamase induction.




  
PubMed:
        8231804


MedLine:
        




    
Source:
Mol Microbiol. 1993 Aug;9(4):703-15.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8231804&query_hl=4

















    ReferenceID:38157




  
Author/Investigator(s):
        Schmidt H, Korfmann G, Barth H, Martin HH.





  
Title:
        The signal transducer encoded by ampG is essential for induction of chromosomal AmpC beta-lactamase in Escherichia coli by beta-lactam antibiotics and 'unspecific' inducers.




  
PubMed:
        7773404


MedLine:
        




    
Source:
Microbiology. 1995 May;141 ( Pt 5):1085-92.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7773404&query_hl=4

















    ReferenceID:38158




  
Author/Investigator(s):
        Chahboune A, Decaffmeyer M, Brasseur R, Joris B.





  
Title:
        Membrane topology of the Escherichia coli AmpG permease required for recycling of cell wall anhydromuropeptides and AmpC beta-lactamase induction.




  
PubMed:
        15728916


MedLine:
        




    
Source:
Antimicrob Agents Chemother. 2005 Mar;49(3):1145-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15728916&query_hl=4









           
Homologs By Global Alignment 

           

       



     
Gene ID:530
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
927
                           PA4393_tr
                           translation of PA4393
                           594
                           99.83
                           99.83
                           0
                           2990.0
     

     
     
37301
                           gb|AAG07781.1|AE004855_3
                           (AE004855) probable permease [Pseudomonas aeruginosa PAO1]
                           594
                           99.83
                           99.83
                           0
                           2990.0
     

     
     
37302
                           gb|AAD21100.1|
                           (AF082985) permease for AmpC beta-lactamase expression AmpG [Pseudomonas aeruginosa]
                           594
                           99.83
                           99.83
                           0
                           2990.0
     

     
     
37303
                           gb|AAO57833.1|
                           (AE016871) ampG protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           595
                           54.78
                           68.73
                           80
                           1616.0
     

     
     
37304
                           gb|AAN66978.1|AE016326_4
                           (AE016779) muropeptide permease AmpG [Pseudomonas putida KT2440]
                           594
                           54.71
                           68.51
                           79
                           1629.0
     

     






      

          
GC ORFID: 43532How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4393Glimmer Score: 

          
Start: 4349638Stop: 4351422

          
Length: 1785


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4393 translation of PA4393Homolog Bit Score 1156.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1990 (ORF: BLASTX 574.0), t_PA4393 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCAGCAATCCTGGCGAGAGGCTCTGGTCGCCTACAAGTCTCCCGCCAGCCTGGCCCTCCTGCTGCTC 
GGCTTCGCCGCCGGCCTGCCGACCATGCTGGTGTTCAACACCCTGTCGGTGTGGCTGCGCGAAGCCGGCGTG 
GCGCGGGATACCATCGGTTTCGCCAGTTGGCTGGGGCTGGTGTACGCCTTCAAGTGGGTCTGGTCGCCGATG 
CTCGACCAGTGGCGCCTGCCCTTCGTCGGCCGTCTCGGCCGGCGCCGTTCCTGGCTGGTGTTCTCGCAGGTG 
CTGATCGCCCTGGGACTGCTCGGCATGGCCCTGTGCAATCCGCAGAGCCACCTGCCCTGGCTGATCGGCCTG 
GCCCTGCTGGTGGCGTTCGCCTCCGCCACCCAGGACATCGCGATCGACGCCTACCGCCTGGAAATCGCCGAG 
GATAGCCGCCAGGCCGCCCTCGCTGCCTGCTACATGACCGGCTACCGCGCGGCGATCCTGCTGGCCAGCGCC 
GGCGCGCTGATTCTCGCCGAATGGTTCGGCTCCACCAGCCTCAACTACAGCCAATCGGCCTGGGGCCTGACC 
TATGCGTTGTTCGCCCTGCTGATCCTGCCTGGGCTGGTCACCAGCCTGCTGATCCGCGAGCCGGCGGTGGAC 
GTGCCGATCCACGTCAACCCGTCGCGTTTCGACTTCAACCACCAACTGCTCTCGGTGCTCCTGCTGCTGATC 
CTGCTGATCTCGCTGCCGGCGATGATCACCGCCCTCCTCGACCGCGCCTGGCCGCGCGCCGGCCTCTACGCG 
CTGCTCATGGGGATCTGCCTGTCGCCGTGGGGACGCCAGCAGATCCGCCCGGTCCGCGAACTGCTCGCCACC 
GTGCGCAGGCCGCTGCTGGTGGCGGCGCGCGGCAAGGAAGTGCCGCTGTTCGATTTCGTCCACCAGGCGGTC 
TCGGTGATGGTGCTGATCATCCTCCTCGTCACCGTCACCGCCATGTGCCGCGCCTACTACTCCGGTGCCTGG 
CCGCGCGGCACGCTGTTCCTGCTGATCGCCGCGTCCTGCCTGTCGGCACCCGGGCGCCTGCTGATGGCCCCG 
GTGCTGACGCCGATCACCGAGTTCGTCCAGCGTTATCGCTGGCAGGCCCTGCTGCTGCTCGGCCTGATCTCC 
ACCTATCGCCTGTCGGACACGGTGATGGGGGTGATGGCCGGGGTCTTCTACATCGACATGGGCTTCTCCAAG 
GAAGTCATCGCCAGTGTCAGCAAGGTCTTCGGCGTACTCATGACCCTGATCGGCGCCGCCGCCGGCGGGGTG 
CTGATCGCCCGCTTCAGCATCCTCTCCATCCTGTTCATCGGCGGTGCCGCTTCGGCTGCCACCAACCTGCTG 
TTCGCCATGCTCGCCCAGCTCGGCCCGCTGCACGCCGAGGCCCTGCCCAGCCATGACGTGATCAGCCTGGTG 
ATGGCGCTCGAGCCGCACGTGCTGATGCTGGTGATGACCATCACCCTCGACAACTTCAGCGGCGGCCTCGCC 
GCCTCGGCCTTCGTCGCCTACCTGTCGAGCCTGACCAACCTGAAGTTCTCCGCCACCCAGTACGCCATGCTC 
AGCTCGACCATGCTCCTGCTGCCGCGCTTCATCGGCGGCTACTCCGGAACCATGGTCGAGAGCCTCGGCTAC 
GAGCACTTCTTCTACGTCACCGCGGTGATGGGCATTCCCACCCTGCTGCTGATCGGCTGGTTGTGGCTGCGC 
CGCGCGCCGTCCAGCGAGACGCCGGCGCCGGGTCACCAGAACGCCGAGCAGCACTGA