ViewGene
Locus Name:
GeneID:
Location:

GeneID:53
TrivialName: PA14_62650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62650
PAO1 Ortholog Locus:PA4735
Sequence Length:3267
Protein Length:1088
Start: 5590504
Stop: 5593770
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08121.1|AE004887_5 (AE004887) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1076/1088 (98%), Positives = 1081/1088 (99%)
Sequence:
ATGCCCAAAGGACTGAAACGCGCTGTCAGCGCCCTGCTGATCACCTTCCTCGTCTATTGCCTGCTGGGCTTC
CTGCTCATACCCGGCATCGGGCTGCGCGTCGCCAACCAGCAACTGGCGCAATACGCCACCGTCCCCGCACGT
CTCGAACGTATCGAATTCAACCCCTTCAGCCTGGAATTGACCCTCTGGGGTCTGCGCCTGGGCGACGAGAAG
AACCCCCAGCTGGCCTTCCGCCGGCTGTACGCCAACCTGCAGCTGGACAGCCTGTGGAAACGCCAGCTGCAC
CTGGCCGACGTCGAGCTGGAAGGTCCGCATACCGAACTGCTGTTCGACGAGAAGGGCCAGCTCAACCTGGCC
AGCCTGTTCAGGATCCCGCCGAGCGAATCGCCCGAGCCGGAACAGCCGAGCGACCCGTTCCCGCTGCGCATC
GACCGCATCCAACTGGCCGAGGGCAGCCTGCACTTCCAGGACCTGCGACCGAGCGAGCCGGTGGACTTCAGC
TTCGATCCGCTGGGTTTCGAGCTGCACAACCTCAGCACCCTGCCCGACGACGGCGCGAAGATGACCCTGGTC
GCCACCGGCCCGAACGGCGGCCGCCTCGACTGGGAAGGCGACCTGACCCTGGTGCCGATCACGTCCAGGGGC
CACCTGAGCGTCAAGGATATCCAGCTCAAGGCCTGGTGGCCCTATGTCCGCGACAATGCCCCGCTGGTGCTG
GAGAACGGCGTGGTCAGCCTCTCCAGCGACTATCGCCTGGACCTGTCCAAGGACACCCAACTGCTGCTCGAC
AAAGCCGCGCTGAAACTCGCCGACTTCAGCATCAATTCGCCCCAGGGCAAGCCGCTGGCCAAGCTCGCCAGC
CTCGACGTGGCCGCTACCACCCTGGACCTGGCCAAGCAGGAAGTGGTGCTCGGCGAAGTCCGCAGCCAGGGC
CTGGAGGCCTGGGCCGCGCGCGAGAAGGACGGCCAGCTAGACTGGCAGAAACTGTTCGCCGACTTCACTCCG
CCGCCACGCAAGGCGCCTGCGCCCAAGCCGGCGGAAAACACCGATCCCGCCGCTGCCCCGGCCGACGCGGCG
CAGACCACCCGCGAACCGGCAACCGACGGTGCCGCCAAGGCAGCCGCGATAGCCTCGGGCGACGCGGGCAAG
GACAGGCCTGCGGAGAAGGACGCCAGCGTCGCCGAGACGGAAAGGGCAACGGACGACAAAGAGTCCGCCAAG
GTCGCGGAAGGCACTGCCGACAAGGTAGCCAAGCAAGAGACGAGCAAGGCTCCGAAGACCGGCAAGGCAACC
GGGCAGGAAACGGCCAAGACTGCGGAAATCGACAAGGCGGCCAGCGACTCTCCGCAACAGCTCGCCGACACT
GCAAAGACGCCTCCGCCGGAAAGTACGAAAGCCGCCGCGGAGACGCCCGCCAAGCCCTGGCACATCGTCCTG
CGCGACGCCCAGCTGCGCGGCTACAAGGCGCACCTGGTGGATCGCCAGCCGGCCACCGAGGTCCCGCTGGAA
GTCGGCCCGCTGGACCTCGACCTGCAGAACGTCGACAGCCTCGGCAAGACCCCCTTCGACCTCAAGCTCAAG
ACCGGCCTCGGCAACCGCGGCCAGGTCCAGGCCAGCGGCCAGGTGGTGCTCGACCCGGTCAGCGCCAGGCTC
AAGGTCAGTACCCGCGACATCGACCTGCGCGTGGCCCAGGCCTACATCTCGCCGTTCATCCGCCTGGAACTG
CGCAGCGGCTTCCTTGGCAGCGAGCTGGCGGTCGACCTGAAGAGCGTCGAGCCGCTGGCCTTCAGCGTCGAC
GGCAGCGCCGAAGTCAGCCAGTTGCATACCCTGGATACCATCAAGGACCGCGACTTCGTCAAATGGACCAAG
CTGACCCTCAACGGCCTCGCCTATCGGCACGAGGACAGCCTGTCGATCCAGAGCGTGTCCTTCGAGGAGCCC
TACGCCCGCTTCATCATCAACGAAGATCGCAGCACCAACGTCAGCGAGCTGATCATCCCGCAACCGGCTAGT
TCGTCCGGCAAGGCCGCCGCCGAAAGCAAGAACGCGCCGGCGAGCAAGCCGCTGGGCATCCACATCGGCGGC
GTACGGATCAACAACGGCTCGGCGAACTTCGCCGACCTGACCCTGATGCCGCCGTTCGGTACCGCCATCCAG
CAGCTCAGCGGCGAAGTCGGCACCCTCGACACGCGCAACTCGCAGCCGGCCAAGGTGGACATCAAGGGCAAG
GTCGACAAGTACGCACCGGTGACCATCGCCGGCGAACTGGACCCATTCGACCCGCTGAAGAAGCTCGACATC
ACCACCAGCTTCAAGCGCGTCGAGCTGACCACCCTGACGCCCTATTCCGGCAAGTTCGCCGGCTACCGCATC
CGCAAGGGGCGACTCAACCTGGACCTGCACTACCAGATCGAACGCAGCCAACTGAAGGCGGAAAACAAGGTC
CTGCTGGAAGGCCTGCAACTCGGCGAGAAGGTCGACAGCCCGGATGCCGTGGACCTGCCGGTGAAGCTGGCG
GTAGCCCTGCTCAAGGACACCAAGGGCAACATCGATATCCAGTTGCCGGTGGCCGGCGACCTGAACAACCCG
GAGTTCAGCGTCATGCCGATCGTCTGGCAGACCCTGCGCAACCTGGTCCTGCGCGCCGTGCAGGCGCCGTTC
AAGTTCATCGCCGGCCTCGCCGCCGGCGGCAACGAGGATCTCGGCACGGTACCCTTCGCCGCGGGCAGCGAC
GAGCTGACGCCGGAAGCCCAGGCCAACCTCGACAAGCTCGCCGATGCGCTCAAGGAGCGGCCGGCGCTGCGC
CTGGAAGTGGAAGGCGTGGCCTCCGCCGCGGCTGACGGTCCCTCGATCGGCGCCAAGCGTCTCGAACTGGAA
TACCAGAACACCTACTACCGCATGCTCCAGCGTCGCGGCGACAAGGTCCCGAGCGACGCCAAGCAACTCGAG
GTACCGGAGAACATGCAGGCACCGCTGCTCGAAGGCATCTACCGGACCCGCCTGAAGCAGCAGCCACCGGCC
GAGTGGAAAGAACTGGACAGCGACGAACGCACCGCGAAGATGCGCGAAGCGGTGATCGCTTCCTGGGCCAAG
AGCCAAGTGCTGCTGCGCCAGATTGGCCAGGCCCGGGCCACCCGGATCAAGGATTATCTGGTGGAGAAAGGC
CAGTTGCCGGACGATCGCATCTACTTGATCGACGTCAGTTTCGCCGAAGGCGAAGACAAGGGTAATGTCGAC
ACCCAATTGCACCTGGATAGCGAGTGA
Translation:
MPKGLKRAVSALLITFLVYCLLGFLLIPGIGLRVANQQLAQYATVPARLERIEFNPFSLELTLWGLRLGDEK
NPQLAFRRLYANLQLDSLWKRQLHLADVELEGPHTELLFDEKGQLNLASLFRIPPSESPEPEQPSDPFPLRI
DRIQLAEGSLHFQDLRPSEPVDFSFDPLGFELHNLSTLPDDGAKMTLVATGPNGGRLDWEGDLTLVPITSRG
HLSVKDIQLKAWWPYVRDNAPLVLENGVVSLSSDYRLDLSKDTQLLLDKAALKLADFSINSPQGKPLAKLAS
LDVAATTLDLAKQEVVLGEVRSQGLEAWAAREKDGQLDWQKLFADFTPPPRKAPAPKPAENTDPAAAPADAA
QTTREPATDGAAKAAAIASGDAGKDRPAEKDASVAETERATDDKESAKVAEGTADKVAKQETSKAPKTGKAT
GQETAKTAEIDKAASDSPQQLADTAKTPPPESTKAAAETPAKPWHIVLRDAQLRGYKAHLVDRQPATEVPLE
VGPLDLDLQNVDSLGKTPFDLKLKTGLGNRGQVQASGQVVLDPVSARLKVSTRDIDLRVAQAYISPFIRLEL
RSGFLGSELAVDLKSVEPLAFSVDGSAEVSQLHTLDTIKDRDFVKWTKLTLNGLAYRHEDSLSIQSVSFEEP
YARFIINEDRSTNVSELIIPQPASSSGKAAAESKNAPASKPLGIHIGGVRINNGSANFADLTLMPPFGTAIQ
QLSGEVGTLDTRNSQPAKVDIKGKVDKYAPVTIAGELDPFDPLKKLDITTSFKRVELTTLTPYSGKFAGYRI
RKGRLNLDLHYQIERSQLKAENKVLLEGLQLGEKVDSPDAVDLPVKLAVALLKDTKGNIDIQLPVAGDLNNP
EFSVMPIVWQTLRNLVLRAVQAPFKFIAGLAAGGNEDLGTVPFAAGSDELTPEAQANLDKLADALKERPALR
LEVEGVASAAADGPSIGAKRLELEYQNTYYRMLQRRGDKVPSDAKQLEVPENMQAPLLEGIYRTRLKQQPPA
EWKELDSDERTAKMREAVIASWAKSQVLLRQIGQARATRIKDYLVEKGQLPDDRIYLIDVSFAEGEDKGNVD
TQLHLDSE*
AnnotationID:63GeneID:53
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 07:07:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4735
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:109




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17251




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37648




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:53_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:53
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
101
                           PA4735_tr
                           translation of PA4735
                           1088
                           98.89
                           99.35
                           0
                           5464.0
     

     
     
12188
                           gb|AAG08121.1|AE004887_5
                           (AE004887) hypothetical protein PA4735 [Pseudomonas aeruginosa PAO1]
                           1088
                           98.89
                           99.35
                           0
                           5464.0
     

     
     
12189
                           gb|AAN70277.1|AE016668_3
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           1089
                           58.21
                           71.53
                           112
                           3214.0
     

     
     
12190
                           gb|AAO57931.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           1107
                           55.46
                           70.18
                           124
                           3168.0
     

     






      

          
GC ORFID: 43055How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4735Glimmer Score: 

          
Start: 4854184Stop: 4857450

          
Length: 3267


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4735 translation of PA4735Homolog Bit Score 2109.0

          
Other Homologs:  t_PA4735 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAAAGGACTGAAACGCGCTGTCAGCGCCCTGCTGATCACCTTCCTCGTCTATTGCCTGCTGGGCTTC 
CTGCTCATACCCGGCATCGGGCTGCGCGTCGCCAACCAGCAACTGGCGCAATACGCCACCGTCCCCGCACGT 
CTCGAACGTATCGAATTCAACCCCTTCAGCCTGGAATTGACCCTCTGGGGTCTGCGCCTGGGCGACGAGAAG 
AACCCCCAGCTGGCCTTCCGCCGGCTGTACGCCAACCTGCAGCTGGACAGCCTGTGGAAACGCCAGCTGCAC 
CTGGCCGACGTCGAGCTGGAAGGTCCGCATACCGAACTGCTGTTCGACGAGAAGGGCCAGCTCAACCTGGCC 
AGCCTGTTCAGGATCCCGCCGAGCGAATCGCCCGAGCCGGAACAGCCGAGCGACCCGTTCCCGCTGCGCATC 
GACCGCATCCAACTGGCCGAGGGCAGCCTGCACTTCCAGGACCTGCGACCGAGCGAGCCGGTGGACTTCAGC 
TTCGATCCGCTGGGTTTCGAGCTGCACAACCTCAGCACCCTGCCCGACGACGGCGCGAAGATGACCCTGGTC 
GCCACCGGCCCGAACGGCGGCCGCCTCGACTGGGAAGGCGACCTGACCCTGGTGCCGATCACGTCCAGGGGC 
CACCTGAGCGTCAAGGATATCCAGCTCAAGGCCTGGTGGCCCTATGTCCGCGACAATGCCCCGCTGGTGCTG 
GAGAACGGCGTGGTCAGCCTCTCCAGCGACTATCGCCTGGACCTGTCCAAGGACACCCAACTGCTGCTCGAC 
AAAGCCGCGCTGAAACTCGCCGACTTCAGCATCAATTCGCCCCAGGGCAAGCCGCTGGCCAAGCTCGCCAGC 
CTCGACGTGGCCGCTACCACCCTGGACCTGGCCAAGCAGGAAGTGGTGCTCGGCGAAGTCCGCAGCCAGGGC 
CTGGAGGCCTGGGCCGCGCGCGAGAAGGACGGCCAGCTAGACTGGCAGAAACTGTTCGCCGACTTCACTCCG 
CCGCCACGCAAGGCGCCTGCGCCCAAGCCGGCGGAAAACACCGATCCCGCCGCTGCCCCGGCCGACGCGGCG 
CAGACCACCCGCGAACCGGCAACCGACGGTGCCGCCAAGGCAGCCGCGATAGCCTCGGGCGACGCGGGCAAG 
GACAGGCCTGCGGAGAAGGACGCCAGCGTCGCCGAGACGGAAAGGGCAACGGACGACAAAGAGTCCGCCAAG 
GTCGCGGAAGGCACTGCCGACAAGGTAGCCAAGCAAGAGACGAGCAAGGCTCCGAAGACCGGCAAGGCAACC 
GGGCAGGAAACGGCCAAGACTGCGGAAATCGACAAGGCGGCCAGCGACTCTCCGCAACAGCTCGCCGACACT 
GCAAAGACGCCTCCGCCGGAAAGTACGAAAGCCGCCGCGGAGACGCCCGCCAAGCCCTGGCACATCGTCCTG 
CGCGACGCCCAGCTGCGCGGCTACAAGGCGCACCTGGTGGATCGCCAGCCGGCCACCGAGGTCCCGCTGGAA 
GTCGGCCCGCTGGACCTCGACCTGCAGAACGTCGACAGCCTCGGCAAGACCCCCTTCGACCTCAAGCTCAAG 
ACCGGCCTCGGCAACCGCGGCCAGGTCCAGGCCAGCGGCCAGGTGGTGCTCGACCCGGTCAGCGCCAGGCTC 
AAGGTCAGTACCCGCGACATCGACCTGCGCGTGGCCCAGGCCTACATCTCGCCGTTCATCCGCCTGGAACTG 
CGCAGCGGCTTCCTTGGCAGCGAGCTGGCGGTCGACCTGAAGAGCGTCGAGCCGCTGGCCTTCAGCGTCGAC 
GGCAGCGCCGAAGTCAGCCAGTTGCATACCCTGGATACCATCAAGGACCGCGACTTCGTCAAATGGACCAAG 
CTGACCCTCAACGGCCTCGCCTATCGGCACGAGGACAGCCTGTCGATCCAGAGCGTGTCCTTCGAGGAGCCC 
TACGCCCGCTTCATCATCAACGAAGATCGCAGCACCAACGTCAGCGAGCTGATCATCCCGCAACCGGCTAGT 
TCGTCCGGCAAGGCCGCCGCCGAAAGCAAGAACGCGCCGGCGAGCAAGCCGCTGGGCATCCACATCGGCGGC 
GTACGGATCAACAACGGCTCGGCGAACTTCGCCGACCTGACCCTGATGCCGCCGTTCGGTACCGCCATCCAG 
CAGCTCAGCGGCGAAGTCGGCACCCTCGACACGCGCAACTCGCAGCCGGCCAAGGTGGACATCAAGGGCAAG 
GTCGACAAGTACGCACCGGTGACCATCGCCGGCGAACTGGACCCATTCGACCCGCTGAAGAAGCTCGACATC 
ACCACCAGCTTCAAGCGCGTCGAGCTGACCACCCTGACGCCCTATTCCGGCAAGTTCGCCGGCTACCGCATC 
CGCAAGGGGCGACTCAACCTGGACCTGCACTACCAGATCGAACGCAGCCAACTGAAGGCGGAAAACAAGGTC 
CTGCTGGAAGGCCTGCAACTCGGCGAGAAGGTCGACAGCCCGGATGCCGTGGACCTGCCGGTGAAGCTGGCG 
GTAGCCCTGCTCAAGGACACCAAGGGCAACATCGATATCCAGTTGCCGGTGGCCGGCGACCTGAACAACCCG 
GAGTTCAGCGTCATGCCGATCGTCTGGCAGACCCTGCGCAACCTGGTCCTGCGCGCCGTGCAGGCGCCGTTC 
AAGTTCATCGCCGGCCTCGCCGCCGGCGGCAACGAGGATCTCGGCACGGTACCCTTCGCCGCGGGCAGCGAC 
GAGCTGACGCCGGAAGCCCAGGCCAACCTCGACAAGCTCGCCGATGCGCTCAAGGAGCGGCCGGCGCTGCGC 
CTGGAAGTGGAAGGCGTGGCCTCCGCCGCGGCTGACGGTCCCTCGATCGGCGCCAAGCGTCTCGAACTGGAA 
TACCAGAACACCTACTACCGCATGCTCCAGCGTCGCGGCGACAAGGTCCCGAGCGACGCCAAGCAACTCGAG 
GTACCGGAGAACATGCAGGCACCGCTGCTCGAAGGCATCTACCGGACCCGCCTGAAGCAGCAGCCACCGGCC 
GAGTGGAAAGAACTGGACAGCGACGAACGCACCGCGAAGATGCGCGAAGCGGTGATCGCTTCCTGGGCCAAG 
AGCCAAGTGCTGCTGCGCCAGATTGGCCAGGCCCGGGCCACCCGGATCAAGGATTATCTGGTGGAGAAAGGC 
CAGTTGCCGGACGATCGCATCTACTTGATCGACGTCAGTTTCGCCGAAGGCGAAGACAAGGGTAATGTCGAC 
ACCCAATTGCACCTGGATAGCGAGTGA