ViewGene
Locus Name:
GeneID:
Location:

GeneID:5299
TrivialName: PA14_59510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59510
PAO1 Ortholog Locus:
Sequence Length:255
Protein Length:84
Start: 5294580
Stop: 5294834
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84191.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 84/84 (100%), Positives = 84/84 (100%)
Sequence:
ATGAATCCATTGTTCACCAACCTCACCCAGGAAACCCTCGCCTACCTCGAGGACCAACTGTCCAACAACGAC
GTCGCCGGCGACGACGAGCTCATCGACTTGTTCATCGAGGAGCTGTCGCTGACCTTGGAGCAGGCGGAAGCG
GCTGTCGCGCTACGCGATCAGTACCTCTGCCAGGTCTTCCTGATCGGCCAAGGGCCGCTGCACCAAGCCGAT
GGACTCAGCTTCGACCCTCACACCAAGAGCGTTCGGTAG
Translation:
MNPLFTNLTQETLAYLEDQLSNNDVAGDDELIDLFIEELSLTLEQAEAAVALRDQYLCQVFLIGQGPLHQAD
GLSFDPHTKSVR*
AnnotationID:5304GeneID:5299
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 10:10:33
Gene Name:
Confidence Code:4
GeneProduct:conserved Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10598




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27745




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5299
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
195824
                           gb|AAP84191.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           84
                           99.99
                           99.99
                           0
                           427.0
     

     






      

          
GC ORFID: 48301How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL066Glimmer Score: 

          
Start: 4558259Stop: 4558513

          
Length: 255


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL066 84 Homolog: XF1757 / Hypothetical protein / X.fastidiosa / 9a5c (AAF84566) translation of RL066Homolog Bit Score 169.0

          
Other Homologs:  t_RL066 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCCATTGTTCACCAACCTCACCCAGGAAACCCTCGCCTACCTCGAGGACCAACTGTCCAACAACGAC 
GTCGCCGGCGACGACGAGCTCATCGACTTGTTCATCGAGGAGCTGTCGCTGACCTTGGAGCAGGCGGAAGCG 
GCTGTCGCGCTACGCGATCAGTACCTCTGCCAGGTCTTCCTGATCGGCCAAGGGCCGCTGCACCAAGCCGAT 
GGACTCAGCTTCGACCCTCACACCAAGAGCGTTCGGTAG