ViewGene
Locus Name:
GeneID:
Location:

GeneID:5298
TrivialName: PA14_67460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67460
PAO1 Ortholog Locus:PA5108
Sequence Length:258
Protein Length:85
Start: 6024037
Stop: 6023780
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08493.1|AE004923_9 (AE004923) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 85/85 (100%), Positives = 85/85 (100%)
Sequence:
ATGGCGTCGTTCCGTACCCTGGCCGTGGTCGCTTTCTGCGTCGTCCTGGCTGCCTGCAGCAAGATCAACCAG
GAAAACTATTCCAAGCTCAAGGCCGGCATGAGCAAGGCCGAGGTCGAGGCGATCCTCGGCAAGCCCACCGAG
TGCTCCGGCGCGCTGGGCATGTCCAGCTGCACCTGGGGCGACGAGAAGGCTTTCATCAGCGTGCAGTACGCG
GCCGACAAGGCGCTGCTCTTCTCCGGCCAGGGGCTCAAGTGA
Translation:
MASFRTLAVVAFCVVLAACSKINQENYSKLKAGMSKAEVEAILGKPTECSGALGMSSCTWGDEKAFISVQYA
ADKALLFSGQGLK*
AnnotationID:5303GeneID:5298
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:15
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA5108
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58595.1| (AE016874) lipoprotein, putative [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 84

 Score =  138 bits (347), Expect = 8e-33
 Identities = 64/83 (77%), Positives = 74/83 (89%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10596




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27743




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5298
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7700
                           PA5108_tr
                           translation of PA5108
                           85
                           99.99
                           99.99
                           0
                           429.0
     

     
     
195821
                           gb|AAG08493.1|AE004923_9
                           (AE004923) hypothetical protein PA5108 [Pseudomonas aeruginosa PAO1]
                           85
                           99.99
                           99.99
                           0
                           429.0
     

     
     
195822
                           gb|AAN70603.1|AE016703_3
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           85
                           78.82
                           90.58
                           1
                           360.0
     

     
     
195823
                           gb|AAO58595.1|
                           (AE016874) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           85
                           75.29
                           87.05
                           1
                           346.0
     

     






      

          
GC ORFID: 48300How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5108Glimmer Score: 

          
Start: 5287722Stop: 5287465

          
Length: 258


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5108 translation of PA5108Homolog Bit Score 169.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3814 (ORF: BLASTX 138.0), t_PA5108 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGTCGTTCCGTACCCTGGCCGTGGTCGCTTTCTGCGTCGTCCTGGCTGCCTGCAGCAAGATCAACCAG 
GAAAACTATTCCAAGCTCAAGGCCGGCATGAGCAAGGCCGAGGTCGAGGCGATCCTCGGCAAGCCCACCGAG 
TGCTCCGGCGCGCTGGGCATGTCCAGCTGCACCTGGGGCGACGAGAAGGCTTTCATCAGCGTGCAGTACGCG 
GCCGACAAGGCGCTGCTCTTCTCCGGCCAGGGGCTCAAGTGA