ViewGene
Locus Name:
GeneID:
Location:

GeneID:5297
TrivialName: PA14_66960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66960
PAO1 Ortholog Locus:PA5068
Sequence Length:249
Protein Length:82
Start: 5977936
Stop: 5978184
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08453.1|AE004920_3 (AE004920) translocation protein TatA [Pseudomonas aeruginosa PAO1]
Identities = 82/82 (100%), Positives = 82/82 (100%)
Sequence:
ATGGGCATTTTTGACTGGAAACACTGGATCGTCATCCTGATCGTCGTGGTACTGGTGTTCGGCACCAAGCGC
CTGAAGAACCTCGGTTCCGACGTCGGCGAAGCGATCAAGGGCTTCCGCAAGGCGGTGAACACCGAGGAAGAC
GACAAGAAGGACCAGCCCGCCGCCCAGCCGGCCCAACCGCTGAACCAGCCGCACACCATCGACGCCCAGGCG
CAGAAGGTCGAAGAGCCGGCGCGCAAGGACTGA
Translation:
MGIFDWKHWIVILIVVVLVFGTKRLKNLGSDVGEAIKGFRKAVNTEEDDKKDQPAAQPAQPLNQPHTIDAQA
QKVEEPARKD*
AnnotationID:5302GeneID:5297
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 05:05:55
Gene Name:tatA
Confidence Code:2
GeneProduct:sec-independent protein translocase TatA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1826
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58581.1| (AE016874) sec-independent protein translocase TatA [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 91

 Score =  126 bits (317), Expect = 2e-29
 Identities = 64/90 (71%), Positives = 73/90 (81%), Gaps = 9/90 (10%)

>gb|AAN70581.1|AE016701_1 (AE016792) Sec-independent protein translocase TatA [Pseudomonas
          putida KT2440]
          Length = 90

 Score =  113 bits (283), Expect = 2e-25
 Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 8/90 (8%)

>emb|CAD16649.1| (AL646072) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia
          solanacearum]
          Length = 85

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 6/79 (7%)






 
Structural Features:
COG1826, TatA, Sec-independent protein secretion pathway components 
[Intracellular trafficking and secretion]
CD-Length = 94 residues,  96.8% aligned
Score = 64.2 bits (156), Expect = 3e-12
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%)








   
Genomic Context:






   
Comment:


















    ReferenceID:10594




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27741




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34998




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5297_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5297
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7699
                           PA5068_tr
                           translation of PA5068
                           82
                           99.99
                           99.99
                           0
                           428.0
     

     
     
195818
                           gb|AAG08453.1|AE004920_3
                           (AE004920) translocation protein TatA [Pseudomonas aeruginosa PAO1]
                           82
                           99.99
                           99.99
                           0
                           428.0
     

     
     
195819
                           gb|AAO58581.1|
                           (AE016874) sec-independent protein translocase TatA [Pseudomonas syringae pv. tomato str. DC3000]
                           93
                           70.96
                           79.56
                           13
                           325.0
     

     
     
195820
                           gb|AAN70581.1|AE016701_1
                           (AE016792) Sec-independent protein translocase TatA [Pseudomonas putida KT2440]
                           90
                           63.33
                           74.44
                           8
                           290.0
     

     






      

          
GC ORFID: 48299How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5068Glimmer Score: 

          
Start: 5241620Stop: 5241868

          
Length: 249


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5068 translation of PA5068Homolog Bit Score 169.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3799 (ORF: BLASTX 129.0), t_PA5068 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCATTTTTGACTGGAAACACTGGATCGTCATCCTGATCGTCGTGGTACTGGTGTTCGGCACCAAGCGC 
CTGAAGAACCTCGGTTCCGACGTCGGCGAAGCGATCAAGGGCTTCCGCAAGGCGGTGAACACCGAGGAAGAC 
GACAAGAAGGACCAGCCCGCCGCCCAGCCGGCCCAACCGCTGAACCAGCCGCACACCATCGACGCCCAGGCG 
CAGAAGGTCGAAGAGCCGGCGCGCAAGGACTGA