ViewGene

Locus Name:
GeneID:
Location:

GeneID:5296
TrivialName: PA14_32470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32470
PAO1 Ortholog Locus:PA2487
Sequence Length:273
Protein Length:90
Start: 2823214
Stop: 2823486
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05875.1|AE004676_7 (AE004676) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 88/90 (97%), Positives = 88/90 (97%)
Sequence:
ATGAAGGCCGAAGACATCCTTCCCGACCGACAGGACCGCATCCACCTGGGCGGCGTGGAGATACGCAAGGGC
AGCGTCGGCGCGTTCATCGCCAACGCCCGGCTGCTGCTTGAGGAGGAACTGCCCGCGGAGCAACGGCGGCAG
GCCGAAGAAGACCTGCGCGCCCTGCTGCCGGCGATCCGGGCACTGGGGCTGCTGGAACTCTTCGAACTGCGC
GACGCGCGACTGCGGACGCTGGTGGCGGATTGGGAAAACGCCGCTGGCCGCTCCTGA
Translation:
MKAEDILPDRQDRIHLGGVEIRKGSVGAFIANARLLLEEELPAEQRRQAEEDLRALLPAIRALGLLELFELR
DARLRTLVADWENAAGRS*
AnnotationID:5301GeneID:5296
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2487
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10592
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27739
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5296

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7698 PA2487_tr translation of PA2487 90 97.77 97.77 0 428.0
195817 gb|AAG05875.1|AE004676_7 (AE004676) hypothetical protein PA2487 [Pseudomonas aeruginosa PAO1] 90 97.77 97.77 0 428.0
GC ORFID: 48298How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2487Glimmer Score:
Start: 2130710Stop: 2130438
Length: 273
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2487 translation of PA2487Homolog Bit Score 169.0
Other Homologs: t_PA2487 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGGCCGAAGACATCCTTCCCGACCGACAGGACCGCATCCACCTGGGCGGCGTGGAGATACGCAAGGGC
AGCGTCGGCGCGTTCATCGCCAACGCCCGGCTGCTGCTTGAGGAGGAACTGCCCGCGGAGCAACGGCGGCAG
GCCGAAGAAGACCTGCGCGCCCTGCTGCCGGCGATCCGGGCACTGGGGCTGCTGGAACTCTTCGAACTGCGC
GACGCGCGACTGCGGACGCTGGTGGCGGATTGGGAAAACGCCGCTGGCCGCTCCTGA