ViewGene
Locus Name:
GeneID:
Location:

GeneID:5295
TrivialName: PA14_33160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33160
PAO1 Ortholog Locus:PA2433
Sequence Length:270
Protein Length:89
Start: 2903221
Stop: 2902952
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05821.1|AE004670_9 (AE004670) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 89/89 (100%), Positives = 89/89 (100%)
Sequence:
ATGATCGTGCGTACCCTGCTCATCGCCGCCGCCCTGCTCGGCGGCACCGCCCAAGCCGCCGAAAGCACCGAC
CTGTGCGGCGCCAACCTGCAGAAGCTGGACGATATCCTCGCCGTGCGCGGCAAGACCTCGGTCACCGGTGCG
CGGGTCACCGAGGTCAAGGAACTCCAGGCCAAGGCCAGGCAGGACCAGGCCAGCGGCGACACCAAGGGCTGC
ATCACCGCCACCACCCAGGCCCTGCAGATCCTGCAGAACGCCGGGAAGAAATGA
Translation:
MIVRTLLIAAALLGGTAQAAESTDLCGANLQKLDDILAVRGKTSVTGARVTEVKELQAKARQDQASGDTKGC
ITATTQALQILQNAGKK*
AnnotationID:5300GeneID:5295
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:47
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2433
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identical to PA2433 of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10590




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27737




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5295
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7697
                           PA2433_tr
                           translation of PA2433
                           89
                           99.99
                           99.99
                           0
                           429.0
     

     
     
195816
                           gb|AAG05821.1|AE004670_9
                           (AE004670) hypothetical protein PA2433 [Pseudomonas aeruginosa PAO1]
                           89
                           99.99
                           99.99
                           0
                           429.0
     

     






      

          
GC ORFID: 48297How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2433Glimmer Score: 

          
Start: 2050695Stop: 2050964

          
Length: 270


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2433 translation of PA2433Homolog Bit Score 169.0

          
Other Homologs:  t_PA2433 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGTGCGTACCCTGCTCATCGCCGCCGCCCTGCTCGGCGGCACCGCCCAAGCCGCCGAAAGCACCGAC 
CTGTGCGGCGCCAACCTGCAGAAGCTGGACGATATCCTCGCCGTGCGCGGCAAGACCTCGGTCACCGGTGCG 
CGGGTCACCGAGGTCAAGGAACTCCAGGCCAAGGCCAGGCAGGACCAGGCCAGCGGCGACACCAAGGGCTGC 
ATCACCGCCACCACCCAGGCCCTGCAGATCCTGCAGAACGCCGGGAAGAAATGA