ViewGene

Locus Name:
GeneID:
Location:

GeneID:5294
TrivialName: PA14_36770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36770
PAO1 Ortholog Locus:PA2149
Sequence Length:243
Protein Length:80
Start: 3278578
Stop: 3278336
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05537.1|AE004642_4 (AE004642) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 80/80 (100%), Positives = 80/80 (100%)
Sequence:
ATGTTCAAGGACTTCGACGCCTGTACCGCCTGGACCGACGCGATGCAGGAGCGCTGCCAGCCGGTCGGCCTG
ATCCTCTATCAGCCCAAGCGGCGTGGCGCGGCGGTACGCATGCTGTGGGTAGTGACCCCGGGTTGCAGTTGC
CTGAGCGACGCCGAGACCGCCGCCGACAACCTGCTCCAGCGCATCACCGACATCGCCGCCGACGGCCGCGTG
CGTTACGCGGACGGCGGCACGCTGTAA
Translation:
MFKDFDACTAWTDAMQERCQPVGLILYQPKRRGAAVRMLWVVTPGCSCLSDAETAADNLLQRITDIAADGRV
RYADGGTL*
AnnotationID:5299GeneID:5294
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:59
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2149
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10588
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27735
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5294

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7696 PA2149_tr translation of PA2149 80 99.99 99.99 0 427.0
195815 gb|AAG05537.1|AE004642_4 (AE004642) hypothetical protein PA2149 [Pseudomonas aeruginosa PAO1] 80 99.99 99.99 0 427.0
GC ORFID: 48296How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2149Glimmer Score:
Start: 1675336Stop: 1675578
Length: 243
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA2149 translation of PA2149Homolog Bit Score 169.0
Other Homologs: t_PA2149 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCAAGGACTTCGACGCCTGTACCGCCTGGACCGACGCGATGCAGGAGCGCTGCCAGCCGGTCGGCCTG
ATCCTCTATCAGCCCAAGCGGCGTGGCGCGGCGGTACGCATGCTGTGGGTAGTGACCCCGGGTTGCAGTTGC
CTGAGCGACGCCGAGACCGCCGCCGACAACCTGCTCCAGCGCATCACCGACATCGCCGCCGACGGCCGCGTG
CGTTACGCGGACGGCGGCACGCTGTAA