ViewGene
Locus Name:
GeneID:
Location:

GeneID:5293
TrivialName: PA14_51310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51310
PAO1 Ortholog Locus:PA1006
Sequence Length:252
Protein Length:83
Start: 4559325
Stop: 4559074
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04395.1|AE004533_6 (AE004533) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 83/83 (100%), Positives = 83/83 (100%)
Sequence:
ATGACGGATAACGATTCATCCCCCCTGGTATGTGACGCGGAGCTGGATGCCAGTGGTCTCAATTGTCCGCTG
CCCCTGCTAAAGGCCAAGCTGGAGCTGAACCGCCTGCCCAGCGGCGGGGTGCTCAAGGTGATCGCCACCGAT
GCCGGGTCGCAGCGAGACTTCCGGGCCTTCGCCCAGCTCGCCGGCCATGAACTGCTGCGCGAAGAGGCCGCC
GAAGGCGTCTATCGATACTGGCTGCGCAAGCGTTAG
Translation:
MTDNDSSPLVCDAELDASGLNCPLPLLKAKLELNRLPSGGVLKVIATDAGSQRDFRAFAQLAGHELLREEAA
EGVYRYWLRKR*
AnnotationID:5298GeneID:5293
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1006, yrkI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation 
      CD-Length = 78 residues,  92.3% aligned
      Score = 82.6 bits (204), Expect = 8e-18
pfam01206, UPF0033, Uncharacterized protein family UPF0033. Score: 69.5, 6e-14






   
Genomic Context:






   
Comment:


















    ReferenceID:10586




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27733




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5293
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7695
                           PA1006_tr
                           translation of PA1006
                           83
                           99.99
                           99.99
                           0
                           427.0
     

     
     
195812
                           gb|AAG04395.1|AE004533_6
                           (AE004533) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           83
                           99.99
                           99.99
                           0
                           427.0
     

     
     
195813
                           gb|AAO57418.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           83
                           77.10
                           83.13
                           0
                           330.0
     

     
     
195814
                           gb|AAN66857.1|AE016314_4
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           83
                           75.90
                           79.51
                           4
                           318.0
     

     






      

          
GC ORFID: 48295How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1006Glimmer Score: 

          
Start: 394582Stop: 394833

          
Length: 252


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1006 translation of PA1006Homolog Bit Score 169.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1722 (ORF: BLASTX 132.0), t_PA1006 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGATAACGATTCATCCCCCCTGGTATGTGACGCGGAGCTGGATGCCAGTGGTCTCAATTGTCCGCTG 
CCCCTGCTAAAGGCCAAGCTGGAGCTGAACCGCCTGCCCAGCGGCGGGGTGCTCAAGGTGATCGCCACCGAT 
GCCGGGTCGCAGCGAGACTTCCGGGCCTTCGCCCAGCTCGCCGGCCATGAACTGCTGCGCGAAGAGGCCGCC 
GAAGGCGTCTATCGATACTGGCTGCGCAAGCGTTAG