ViewGene
Locus Name:
GeneID:
Location:

GeneID:5292
TrivialName: PA14_55070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55070
PAO1 Ortholog Locus:PA0986
Sequence Length:264
Protein Length:87
Start: 4892399
Stop: 4892136
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04375.1|AE004531_12 (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 84/87 (96%), Positives = 86/87 (98%)
Sequence:
GTGAAAAAGCGTTTTACCGAAGAGCAGATTCTCGACTTCCTCAAGCAGGCGGAGGCCGGTGTGCCGATGGAG
GAGCTGTGTCGGCGGCATGGCTTCAGTGATGCCTCGTTCTACACCTGGCGGGCGAAGTTTGGCGGTATGACC
GTGGCGGACACCAAACGGTTGAAGGATCTTGAACTGGAAAACAGCCGATTGAAGAAGTTGCTCGCCGAGGCC
CACCTCGACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAA
Translation:
MKKRFTEEQILDFLKQAEAGVPMEELCRRHGFSDASFYTWRAKFGGMTVADTKRLKDLELENSRLKKLLAEA
HLDIESLKVVARGKG*
AnnotationID:5297GeneID:5292
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 16:04:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0986
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01527
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|12698408|gb|AAK01522.1|  transposase A [Pseudomonas aeruginosa]
     Length=87
     Score =  167 bits (424),  Expect = 7e-41
     Identities = 83/87 (95%), Positives = 85/87 (97%), Gaps = 0/87 (0%)

gi|76578885|gb|ABA48360.1|  IS407A, transposase OrfA [Burkholderia pseudomallei 1710b]
gi|52429769|gb|AAU50362.1|  IS407A, transposase OrfA [Burkholderia mallei ATCC 23344]
gi|52208145|emb|CAH34075.1|  putative transposase protein [Burkholderia pseudomallei K96243]
gi|53720723|ref|YP_109709.1|  putative transposase [Burkholderia pseudomallei K96243]
gi|53718593|ref|YP_107579.1|  insertion element hypothetical protein [Burkholderia pseudomallei K96243]
gi|53717731|ref|YP_106717.1|  putative transposase protein [Burkholderia pseudomallei K96243]
gi|149101|gb|AAA25039.1|  unknown [Insertion sequence IS407]
gi|69987351|ref|ZP_00641312.1|  COG2801: Transposase and inactivated derivatives [Burkholderia mallei FMH]
gi|53726330|ref|YP_104817.1|  IS407A, transposase OrfA [Burkholderia mallei ATCC 23344]
gi|140839|sp|P24580|YI74_BURCE  Insertion element IS407 hypothetical 10.0 kDa protein (ORF4)
     Length=87
     Score =  142 bits (358),  Expect = 3e-33
     Identities = 66/86 (76%), Positives = 81/86 (94%), Gaps = 0/86 (0%)






 
Structural Features:
pfam01527, Transposase_8, Transposase. 
             CD-Length = 80 residues, 100.0% aligned
             Score = 59.1 bits (143), Expect = 1e-10






   
Genomic Context:
The gene pair PA0986 and PA0987 appear in two positions in the PA14 genome:
here and at GeneIDs 5280 and 2907 (Trivial Names PA14_03180 and PA14_03170,
respectively).  Neither of these two locations are in the genomic context 
found in PAO1.






   
Comment:


















    ReferenceID:15302




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5292
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7694
                           PA0986_tr
                           translation of PA0986
                           87
                           96.55
                           98.85
                           0
                           429.0
     

     
     
195771
                           gb|AAG04375.1|AE004531_12
                           (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           87
                           95.40
                           98.85
                           0
                           426.0
     

     
     
195772
                           gb|AAK01522.1|
                           (AF241171) transposase A [Pseudomonas aeruginosa]
                           87
                           94.25
                           97.70
                           0
                           420.0
     

     
     
195773
                           gb|AAA25039.1|
                           (M82980) ORF4 [Insertion sequence IS407]
                           87
                           74.71
                           93.10
                           0
                           352.0
     

     
     
195774
                           gb|AAN64699.1|
                           (AF285636) TnpA [Burkholderia mallei]
                           87
                           73.56
                           91.95
                           0
                           345.0
     

     






      

          
GC ORFID: 48294How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0986Glimmer Score: 

          
Start: 61508Stop: 61771

          
Length: 264


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0986 translation of PA0986Homolog Bit Score 169.0

          
Other Homologs:  t_PA0986 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAAAAGCGTTTTACCGAAGAGCAGATTCTCGACTTCCTCAAGCAGGCGGAGGCCGGTGTGCCGATGGAG 
GAGCTGTGTCGGCGGCATGGCTTCAGTGATGCCTCGTTCTACACCTGGCGGGCGAAGTTTGGCGGTATGACC 
GTGGCGGACACCAAACGGTTGAAGGATCTTGAACTGGAAAACAGCCGATTGAAGAAGTTGCTCGCCGAGGCC 
CACCTCGACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAA