ViewGene
Locus Name:
GeneID:
Location:

GeneID:5291
TrivialName: PA14_00150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00150
PAO1 Ortholog Locus:PA0014
Sequence Length:273
Protein Length:90
Start: 16608
Stop: 16336
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03404.1|AE004441_5 (AE004441) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 88/90 (97%), Positives = 88/90 (97%)
Sequence:
ATGTCGAAGCACGAGCGTTCAGTCCCGTCCTATGTCGAATACCCATACGAGCAAGCGATTCTCTACGTTCAC
CGGAACGCCTCCGCCAATGAGATGCTCGAATCCGTACAGGAGCGCCTGAGGGCTCTCCTCGGTCTCCTCCAT
GCCTTGGAAAGGATCGAAGTGCGGACAGGGCAGGGCGTTCCCATTCAGCGCGTGGCGCACATCCTGGTCACG
CTCGGCGGCGATGCCCTGACGCTGCTCACGGCCGCGCACCGGGCTACCACCTCCTGA
Translation:
MSKHERSVPSYVEYPYEQAILYVHRNASANEMLESVQERLRALLGLLHALERIEVRTGQGVPIQRVAHILVT
LGGDALTLLTAAHRATTS*
AnnotationID:5296GeneID:5291
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 11:11:34
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0014
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10582




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27728




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5291
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7693
                           PA0014_tr
                           translation of PA0014
                           90
                           97.77
                           97.77
                           0
                           431.0
     

     
     
195770
                           gb|AAG03404.1|AE004441_5
                           (AE004441) hypothetical protein PA0014 [Pseudomonas aeruginosa PAO1]
                           90
                           97.77
                           97.77
                           0
                           431.0
     

     






      

          
GC ORFID: 48293How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0014Glimmer Score: 

          
Start: 5817945Stop: 5817673

          
Length: 273


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0014 translation of PA0014Homolog Bit Score 170.0

          
Other Homologs:  t_PA0014 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAAGCACGAGCGTTCAGTCCCGTCCTATGTCGAATACCCATACGAGCAAGCGATTCTCTACGTTCAC 
CGGAACGCCTCCGCCAATGAGATGCTCGAATCCGTACAGGAGCGCCTGAGGGCTCTCCTCGGTCTCCTCCAT 
GCCTTGGAAAGGATCGAAGTGCGGACAGGGCAGGGCGTTCCCATTCAGCGCGTGGCGCACATCCTGGTCACG 
CTCGGCGGCGATGCCCTGACGCTGCTCACGGCCGCGCACCGGGCTACCACCTCCTGA