ViewGene
Locus Name:
GeneID:
Location:

GeneID:5290
TrivialName: PA14_42310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42310
PAO1 Ortholog Locus:PA1719
Sequence Length:258
Protein Length:85
Start: 3772035
Stop: 3771778
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05108.1|AE004598_7 (AE004598) type III export protein PscF [Pseudomonas aeruginosa PAO1]
Identities = 85/85 (100%), Positives = 85/85 (100%)
Sequence:
ATGGCGCAGATATTCAACCCCAACCCGGGGAATACCCTCGATACCGTGGCCAATGCCCTGAAGGAGCAGGCC
AACGCAGCGAACAAGGACGTCAACGACGCGATCAAGGCCTTGCAGGGGACCGACAATGCCGACAACCCGGCG
CTGCTGGCCGAGCTGCAACACAAGATCAACAAGTGGTCGGTCATCTACAACATCAACTCGACGGTGACCCGG
GCGCTGCGCGACCTGATGCAAGGCATCCTGCAGAAGATCTGA
Translation:
MAQIFNPNPGNTLDTVANALKEQANAANKDVNDAIKALQGTDNADNPALLAELQHKINKWSVIYNINSTVTR
ALRDLMQGILQKI*
AnnotationID:5295GeneID:5290
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:15
Gene Name:pscF
Confidence Code:1
GeneProduct:type III export protein PscF
Cell Localization:()
Synonyms:yscF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18031.1| (AY144116) LscF [Photorhabdus luminescens]
          Length = 101

 Score =  117 bits (292), Expect = 2e-26
 Identities = 63/86 (73%), Positives = 72/86 (83%), Gaps = 3/86 (3%)

>gb|AAC69778.1| (AF074612) type III secretion protein [Yersinia pestis KIM]
          Length = 87

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 50/72 (69%), Positives = 59/72 (81%), Gaps = 2/72 (2%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10580




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27726




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37841




  
Author/Investigator(s):
        Yahr TL, Goranson J, Frank DW.





  
Title:
        Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway.




  
PubMed:
        8971719


MedLine:
        




    
Source:
Mol Microbiol. 1996 Dec;22(5):991-1003.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=97126825&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:5290
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7692
                           PA1719_tr
                           translation of PA1719
                           85
                           99.99
                           99.99
                           0
                           430.0
     

     
     
195766
                           gb|AAG05108.1|AE004598_7
                           (AE004598) type III export protein PscF [Pseudomonas aeruginosa PAO1]
                           85
                           99.99
                           99.99
                           0
                           430.0
     

     
     
195767
                           gb|AAC44777.1|
                           (U56077) PscF [Pseudomonas aeruginosa]
                           85
                           99.99
                           99.99
                           0
                           430.0
     

     
     
195769
                           emb|CAE16153.1|
                           (BX571871) Type III secretion component protein SctF [Photorhabdus luminescens subsp. laumondii TTO1]
                           86
                           72.09
                           82.55
                           3
                           291.0
     

     
     
195768
                           gb|AAO18031.1|
                           (AY144116) LscF [Photorhabdus luminescens]
                           103
                           61.16
                           69.90
                           20
                           296.0
     

     






      

          
GC ORFID: 48292How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1719Glimmer Score: 

          
Start: 1181874Stop: 1182131

          
Length: 258


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1719 translation of PA1719Homolog Bit Score 170.0

          
Other Homologs:  t_PA1719 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGCAGATATTCAACCCCAACCCGGGGAATACCCTCGATACCGTGGCCAATGCCCTGAAGGAGCAGGCC 
AACGCAGCGAACAAGGACGTCAACGACGCGATCAAGGCCTTGCAGGGGACCGACAATGCCGACAACCCGGCG 
CTGCTGGCCGAGCTGCAACACAAGATCAACAAGTGGTCGGTCATCTACAACATCAACTCGACGGTGACCCGG 
GCGCTGCGCGACCTGATGCAAGGCATCCTGCAGAAGATCTGA