ViewGene
Locus Name:
GeneID:
Location:

GeneID:529
TrivialName: PA14_14360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14360
PAO1 Ortholog Locus:PA3839
Sequence Length:1833
Protein Length:610
Start: 1225946
Stop: 1224114
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07226.1|AE004801_4 (AE004801) probable sodium:sulfate symporter [Pseudomonas aeruginosa PAO1]
Identities = 608/610 (99%), Positives = 608/610 (99%)
Sequence:
ATGAACCTCGAACTGCTCTGGGTGGTCGGCCTGCTCGCCACCACCGTCGCCCTCTTCATCCACAACCGCCTG
CGCCTGGACGTGATCGCCCTGCTGGTGATCATGGCCTTCAGCGTCAGCGGAACCCTTACCCTCAACGAAGCC
CTGGCCGGCTTCAGCGATCCCAGCGTGATACTGATCGCCGCGCTGTTCGTGATCGGCGAAGGCCTGGTGCGT
ACCGGGGTGGCCTACCAGGTCGGCGACTGGCTGATCGCCCGCGCCGGCAGCAGCGAAGCGCGCCTGCTGGTA
CTGCTGATGCTGGCGGTGGCCGGGTTGGGCTCAGTGATGAGTTCCACCGGGGTGGTGGCGATCTTCATCCCG
GTGGTCCTGAGCATCGCCGCCAAGCTGAAGATCCCTCCGGGCCGGCTGATGATGCCGCTGGCCTTCGCCGGA
CTGATCAGCGGCATGATGACCCTGGTCGCCACACCGCCGAACATGGTGGTCAACAGCGAGCTGGCGCGCGAG
GGTCATGCCGGCTTCGGCTTCTTCGCCTTCACCCCGATAGGCCTGATGGTGCTCGCCATCGGCGTGGCCTAC
ATGCTGCTCACGCGCAACTGGCTGAACGCCGCCAGCCCGGCGGAAGTCGGCGCGCCGAAGGCACGGCGGACC
CTGCGCGACCTGATCCGCGACTATCGCCTGGCCGGCCGCGAGCGGCGCCTGCAGGTCCAGCTCGGCTCGCCG
TTGATCGGCAGCACCCTGGAAGAACTGCAACTGCGCACCCGCCTGGGCGCCAACGTGGTCGGCCTGGAGCGG
GTGCGCAAGTTCCACAGCGAGGTGGTCAAGGTCGGCGGCAGCACCGAGCTGAAGGCGGGCGACGTGTTGCTG
CTGGACGTCTTCGCCCCTCCGGAGGACATGGACCGGCGCTGCGCCGAGCTGAACCTGGTGCGCCTGCCGTTC
CGCGCCAGCTACTTCATCGACCAGTCGCGGGAGGTCGGCATGGCCGAGGTGACTCTGCCGCCGGACTCCACC
CTGCTCGGCAAGAGCGTCCTGGAGCTGGGCTTCCGTTCGCAGTACGGGCTCAACGTGGTCGGCCTGCGTCGC
GACCACGAAGCGCTCACCGACGGCATGCTGGAAGAGAAGCTGCGCCTGGGCGATACCCTGCTGGTGATCGGC
GCCTGGAAGGCGATCCGCCAGTTGCAGGGACGCAACCGCGATTTCCTGGTGCTCAGCCTGCCGGCGGAGATC
GACGAGGTGGCGCCGGCCCTGAGCAAGGCGCCGCACGCCCTGCTCAGCCTGGCCGTGATGGTGGCGCTGATG
GTCAGCGGGGTGGTGCCCAACGTGGTCGCGGCACTGGTCGGCTGCCTGTTGATGGGCCTGTTCCGTTGCATC
GACATGGACGGCGCCTACCGCGCCATCCATTGGCAAAGCCTGGTCCTGATCGTCGGCATGCTGCCCTTCGCC
CTGGCCCTGCAGAAGACCGGCGGTATCGACCTGGTGGTCTCGCTGCTGGTCGACGCCCTCGGCGACGCCGGC
CCGCGCGTGCTGCTGGCCAGCCTGTTCCTGCTCACCGCGGCCATCGGCCTGTTCATCTCCAACACCGCTACC
GCGGTGCTGATGGCGCCGATCGCCATCGCCACCGCCAACCAGATCGGCGCCTCGCCCTACCCCTTCGCCATG
GTGGTGGCGGTGGCGGCCTCGGCAGCCTTCATGACGCCGATTTCCTCGCCGGTGAACACCCTGGTGCTGGGC
CCTGGCCAATACCGCTTCGGCGACTTCGTCCGGATCGGCGTGCCATTTACCCTGCTGGTGATGTTCGTCTGC
GTGCTGGTGATTCCGTGGCTGTTTCCATTGTGA
Translation:
MNLELLWVVGLLATTVALFIHNRLRLDVIALLVIMAFSVSGTLTLNEALAGFSDPSVILIAALFVIGEGLVR
TGVAYQVGDWLIARAGSSEARLLVLLMLAVAGLGSVMSSTGVVAIFIPVVLSIAAKLKIPPGRLMMPLAFAG
LISGMMTLVATPPNMVVNSELAREGHAGFGFFAFTPIGLMVLAIGVAYMLLTRNWLNAASPAEVGAPKARRT
LRDLIRDYRLAGRERRLQVQLGSPLIGSTLEELQLRTRLGANVVGLERVRKFHSEVVKVGGSTELKAGDVLL
LDVFAPPEDMDRRCAELNLVRLPFRASYFIDQSREVGMAEVTLPPDSTLLGKSVLELGFRSQYGLNVVGLRR
DHEALTDGMLEEKLRLGDTLLVIGAWKAIRQLQGRNRDFLVLSLPAEIDEVAPALSKAPHALLSLAVMVALM
VSGVVPNVVAALVGCLLMGLFRCIDMDGAYRAIHWQSLVLIVGMLPFALALQKTGGIDLVVSLLVDALGDAG
PRVLLASLFLLTAAIGLFISNTATAVLMAPIAIATANQIGASPYPFAMVVAVAASAAFMTPISSPVNTLVLG
PGQYRFGDFVRIGVPFTLLVMFVCVLVIPWLFPL*
AnnotationID:538GeneID:529
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:41
Gene Name:
Confidence Code:3
GeneProduct:putative sodium/sulphate transporter
Cell Localization:()
Synonyms:PA3839
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG047
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69525.1|AE016586_4 (AE016788) transporter, sodium/sulfate symporter family
           [Pseudomonas putida KT2440]
          Length = 609

 Score =  838 bits (2166), Expect = 0.0
 Identities = 427/610 (70%), Positives = 512/610 (83%), Gaps = 1/610 (0%)

>gb|AAO68237.1| (AE016836) putative sodium/sulphate transporter [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 608

 Score =  734 bits (1894), Expect = 0.0
 Identities = 372/609 (61%), Positives = 471/609 (77%), Gaps = 2/609 (0%)

>gb|AAC75352.1| (AE000318) putative transport protein [Escherichia coli K12]
          Length = 610

 Score =  733 bits (1892), Expect = 0.0
 Identities = 369/609 (60%), Positives = 473/609 (77%)






 
Structural Features:
COG0471, CitT, Di- and tricarboxylate transporters 
[Inorganic ion transport and metabolism]
CD-Length = 461 residues,  98.7% aligned
Score =  180 bits (457), Expect = 1e-45
Identities = 120/587 (20%), Positives = 203/587 (34%), Gaps = 132/587 (22%)









   
Genomic Context:






   
Comment:


















    ReferenceID:1061




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18203




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31720




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:529_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:529
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
926
                           PA3839_tr
                           translation of PA3839
                           610
                           99.67
                           99.67
                           0
                           2994.0
     

     
     
37283
                           gb|AAG07226.1|AE004801_4
                           (AE004801) probable sodium:sulfate symporter [Pseudomonas aeruginosa PAO1]
                           610
                           99.67
                           99.67
                           0
                           2994.0
     

     
     
37284
                           gb|AAN69525.1|AE016586_4
                           (AE016788) transporter, sodium/sulfate symporter family [Pseudomonas putida KT2440]
                           613
                           69.98
                           83.68
                           7
                           2168.0
     

     
     
37285
                           emb|CAC91363.1|
                           (AJ414152) putative ion transport protein [Yersinia pestis CO92]
                           610
                           66.39
                           80.65
                           0
                           2056.0
     

     
     
37287
                           emb|CAE15467.1|
                           (BX571869) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           611
                           66.12
                           81.01
                           2
                           2045.0
     

     






      

          
GC ORFID: 43531How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3839Glimmer Score: 

          
Start: 3727992Stop: 3729824

          
Length: 1833


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3839 translation of PA3839Homolog Bit Score 1157.0

          
Other Homologs:  t_PA3839 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTCGAACTGCTCTGGGTGGTCGGCCTGCTCGCCACCACCGTCGCCCTCTTCATCCACAACCGCCTG 
CGCCTGGACGTGATCGCCCTGCTGGTGATCATGGCCTTCAGCGTCAGCGGAACCCTTACCCTCAACGAAGCC 
CTGGCCGGCTTCAGCGATCCCAGCGTGATACTGATCGCCGCGCTGTTCGTGATCGGCGAAGGCCTGGTGCGT 
ACCGGGGTGGCCTACCAGGTCGGCGACTGGCTGATCGCCCGCGCCGGCAGCAGCGAAGCGCGCCTGCTGGTA 
CTGCTGATGCTGGCGGTGGCCGGGTTGGGCTCAGTGATGAGTTCCACCGGGGTGGTGGCGATCTTCATCCCG 
GTGGTCCTGAGCATCGCCGCCAAGCTGAAGATCCCTCCGGGCCGGCTGATGATGCCGCTGGCCTTCGCCGGA 
CTGATCAGCGGCATGATGACCCTGGTCGCCACACCGCCGAACATGGTGGTCAACAGCGAGCTGGCGCGCGAG 
GGTCATGCCGGCTTCGGCTTCTTCGCCTTCACCCCGATAGGCCTGATGGTGCTCGCCATCGGCGTGGCCTAC 
ATGCTGCTCACGCGCAACTGGCTGAACGCCGCCAGCCCGGCGGAAGTCGGCGCGCCGAAGGCACGGCGGACC 
CTGCGCGACCTGATCCGCGACTATCGCCTGGCCGGCCGCGAGCGGCGCCTGCAGGTCCAGCTCGGCTCGCCG 
TTGATCGGCAGCACCCTGGAAGAACTGCAACTGCGCACCCGCCTGGGCGCCAACGTGGTCGGCCTGGAGCGG 
GTGCGCAAGTTCCACAGCGAGGTGGTCAAGGTCGGCGGCAGCACCGAGCTGAAGGCGGGCGACGTGTTGCTG 
CTGGACGTCTTCGCCCCTCCGGAGGACATGGACCGGCGCTGCGCCGAGCTGAACCTGGTGCGCCTGCCGTTC 
CGCGCCAGCTACTTCATCGACCAGTCGCGGGAGGTCGGCATGGCCGAGGTGACTCTGCCGCCGGACTCCACC 
CTGCTCGGCAAGAGCGTCCTGGAGCTGGGCTTCCGTTCGCAGTACGGGCTCAACGTGGTCGGCCTGCGTCGC 
GACCACGAAGCGCTCACCGACGGCATGCTGGAAGAGAAGCTGCGCCTGGGCGATACCCTGCTGGTGATCGGC 
GCCTGGAAGGCGATCCGCCAGTTGCAGGGACGCAACCGCGATTTCCTGGTGCTCAGCCTGCCGGCGGAGATC 
GACGAGGTGGCGCCGGCCCTGAGCAAGGCGCCGCACGCCCTGCTCAGCCTGGCCGTGATGGTGGCGCTGATG 
GTCAGCGGGGTGGTGCCCAACGTGGTCGCGGCACTGGTCGGCTGCCTGTTGATGGGCCTGTTCCGTTGCATC 
GACATGGACGGCGCCTACCGCGCCATCCATTGGCAAAGCCTGGTCCTGATCGTCGGCATGCTGCCCTTCGCC 
CTGGCCCTGCAGAAGACCGGCGGTATCGACCTGGTGGTCTCGCTGCTGGTCGACGCCCTCGGCGACGCCGGC 
CCGCGCGTGCTGCTGGCCAGCCTGTTCCTGCTCACCGCGGCCATCGGCCTGTTCATCTCCAACACCGCTACC 
GCGGTGCTGATGGCGCCGATCGCCATCGCCACCGCCAACCAGATCGGCGCCTCGCCCTACCCCTTCGCCATG 
GTGGTGGCGGTGGCGGCCTCGGCAGCCTTCATGACGCCGATTTCCTCGCCGGTGAACACCCTGGTGCTGGGC 
CCTGGCCAATACCGCTTCGGCGACTTCGTCCGGATCGGCGTGCCATTTACCCTGCTGGTGATGTTCGTCTGC 
GTGCTGGTGATTCCGTGGCTGTTTCCATTGTGA