ViewGene
Locus Name:
GeneID:
Location:

GeneID:5288
TrivialName: PA14_06800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06800
PAO1 Ortholog Locus:PA0522
Sequence Length:258
Protein Length:85
Start: 591645
Stop: 591902
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03911.1|AE004489_3 (AE004489) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 84/85 (98%), Positives = 84/85 (98%)
Sequence:
ATGCGAACCCTGACCCTCTGCTGGCTGGCGTTGCTGGCGCTGGCCGTGGCCGGTGTGCTGCTGGGCGGCGCC
GGCGACTCTCCCTGGCTGCTGGCGGCGGTGCTGGCCTGCGCGGTGGCCAAGGGCTGGCTGATCGGCGAGCGC
TTCATGGAGCTGGCCCATGCCCCGGCGCTATGGCGCCGCCTGCTGCTGGCCTGGCCGCTGCTGATGGCCCTG
GCGGTGGGCGCTGCGCTGTACCTGGCGCGGATGAATAACTGA
Translation:
MRTLTLCWLALLALAVAGVLLGGAGDSPWLLAAVLACAVAKGWLIGERFMELAHAPALWRRLLLAWPLLMAL
AVGAALYLARMNN*
AnnotationID:5293GeneID:5288
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0522
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10576




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27722




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5288
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7691
                           PA0522_tr
                           translation of PA0522
                           85
                           98.82
                           98.82
                           0
                           433.0
     

     
     
195763
                           gb|AAG03911.1|AE004489_3
                           (AE004489) hypothetical protein PA0522 [Pseudomonas aeruginosa PAO1]
                           85
                           98.82
                           98.82
                           0
                           433.0
     

     
     
195764
                           dbj|BAA07125.1|
                           (D37883) ORF3 [Pseudomonas aeruginosa]
                           85
                           98.82
                           98.82
                           0
                           433.0
     

     






      

          
GC ORFID: 48290How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0522Glimmer Score: 

          
Start: 6392987Stop: 6393244

          
Length: 258


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0522 translation of PA0522Homolog Bit Score 171.0

          
Other Homologs:  t_PA0522 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAACCCTGACCCTCTGCTGGCTGGCGTTGCTGGCGCTGGCCGTGGCCGGTGTGCTGCTGGGCGGCGCC 
GGCGACTCTCCCTGGCTGCTGGCGGCGGTGCTGGCCTGCGCGGTGGCCAAGGGCTGGCTGATCGGCGAGCGC 
TTCATGGAGCTGGCCCATGCCCCGGCGCTATGGCGCCGCCTGCTGCTGGCCTGGCCGCTGCTGATGGCCCTG 
GCGGTGGGCGCTGCGCTGTACCTGGCGCGGATGAATAACTGA