ViewGene

Locus Name:
GeneID:
Location:

GeneID:5283
TrivialName: PA14_45760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45760
PAO1 Ortholog Locus:PA1447
Sequence Length:270
Protein Length:89
Start: 4068942
Stop: 4068673
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04836.1|AE004574_7 (AE004574) flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa PAO1]
Identities = 89/89 (100%), Positives = 89/89 (100%)
Sequence:
ATGACCCCTGAGGTGGCACTCGACCTGTTCCGCGAGGCGTTGTGGCTGACGGCGATGATCGTCGGCGTGCTG
GTGGTTCCGAGCCTGCTGGTCGGTCTCGTGGTGGCGATGTTCCAGGCCGCCACCCAGATCAACGAACAGACC
CTGAGCTTCCTGCCGCGCCTGATGGTGATCCTGCTCACCCTGATCGTGCTGGGCCCCTGGCTGCTGCGGCAG
CTGATGGAGTACACCCAGACGCTGATCGGCAACATCCCGCTGCTGATCGGCTGA
Translation:
MTPEVALDLFREALWLTAMIVGVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLMVILLTLIVLGPWLLRQ
LMEYTQTLIGNIPLLIG*
AnnotationID:5288GeneID:5283
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 10:10:29
Gene Name:fliQ
Confidence Code:2
GeneProduct:flagellar biosynthetic protein FliQ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1987
Secondary Functional Category(ies):chemotaxis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69932.1|AE016632_3 (AE016790) flagellar biosynthetic protein FliQ [Pseudomonas
          putida KT2440]
          Length = 89

 Score =  140 bits (352), Expect = 2e-33
 Identities = 69/89 (77%), Positives = 80/89 (89%)

>gb|AAO55491.1| (AE016862) flagellar biosynthetic protein FliQ [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 89

 Score =  135 bits (340), Expect = 5e-32
 Identities = 67/89 (75%), Positives = 79/89 (88%)

>gb|AAN56216.1|AE015759_8 (AE015759) flagellar biosynthetic protein FliQ [Shewanella
          oneidensis MR-1]
          Length = 89

 Score =  103 bits (257), Expect = 2e-22
 Identities = 49/89 (55%), Positives = 69/89 (77%)

Structural Features:
COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 89 residues, 100.0% aligned
Score = 83.7 bits (207), Expect = 4e-18
Identities = 46/89 (51%), Positives = 70/89 (78%)
Genomic Context:
Comment:
ReferenceID:10566
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27712
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37383
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5283_cdd.html
URL:
ReferenceID:37974
Author/Investigator(s): Malakooti J, Ely B, Matsumura P.
Title: Molecular characterization, nucleotide sequence, and expression of the fliO, fliP, fliQ, and fliR genes of Escherichia coli.
PubMed: 8282695
MedLine:
Source:
J Bacteriol. 1994 Jan;176(1):189-97.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8282695
ReferenceID:37979
Author/Investigator(s): Ohnishi K, Fan F, Schoenhals GJ, Kihara M, Macnab RM.
Title: The FliO, FliP, FliQ, and FliR proteins of Salmonella typhimurium: putative components for flagellar assembly.
PubMed: 9324257
MedLine:
Source:
J Bacteriol. 1997 Oct;179(19):6092-9.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9324257
ReferenceID:37981
Author/Investigator(s): Zhuang WY, Shapiro L.
Title: Caulobacter FliQ and FliR membrane proteins, required for flagellar biogenesis and cell division, belong to a family of virulence factor export proteins.
PubMed: 7814323
MedLine:
Source:
J Bacteriol. 1995 Jan;177(2):343-56.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7814323
Homologs By Global Alignment
Gene ID:5283

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7685 PA1447_tr translation of PA1447 89 99.99 99.99 0 434.0
195548 gb|AAG04836.1|AE004574_7 (AE004574) flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa PAO1] 89 99.99 99.99 0 434.0
195549 gb|AAN69932.1|AE016632_3 (AE016790) flagellar biosynthetic protein FliQ [Pseudomonas putida KT2440] 89 77.52 89.88 0 352.0
195550 gb|AAO55491.1| (AE016862) flagellar biosynthetic protein FliQ [Pseudomonas syringae pv. tomato str. DC3000] 89 75.28 88.76 0 340.0
195551 gb|AAD56297.1| (AF031418) FliQ [Pseudomonas putida] 89 74.15 87.64 0 330.0
GC ORFID: 48285How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1447Glimmer Score:
Start: 884967Stop: 885236
Length: 270
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1447 translation of PA1447Homolog Bit Score 171.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7932 (ORF: BLASTX 135.0), t_PA1447 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCCTGAGGTGGCACTCGACCTGTTCCGCGAGGCGTTGTGGCTGACGGCGATGATCGTCGGCGTGCTG
GTGGTTCCGAGCCTGCTGGTCGGTCTCGTGGTGGCGATGTTCCAGGCCGCCACCCAGATCAACGAACAGACC
CTGAGCTTCCTGCCGCGCCTGATGGTGATCCTGCTCACCCTGATCGTGCTGGGCCCCTGGCTGCTGCGGCAG
CTGATGGAGTACACCCAGACGCTGATCGGCAACATCCCGCTGCTGATCGGCTGA