ViewGene
Locus Name:
GeneID:
Location:

GeneID:5282
TrivialName: PA14_48950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48950
PAO1 Ortholog Locus:PA0722
Sequence Length:252
Protein Length:83
Start: 4351363
Stop: 4351112
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04111.1|AE004507_10 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
Identities = 83/83 (100%), Positives = 83/83 (100%)
Sequence:
ATGTCAGGCGTTGTCGCTGTGCAGGTGTGTACCGCGTGGACCTCGACTCCCGAGGGCTTCATGGCGTGTCGC
GAACTCGCATGGCAACAGGCCTACCTGATTCCGCCCGAGGCCGCTGGATACGTGGACATCCTGGTCAACGGT
GGTTTCTCCCCGGAAGCCTTCGGCATCGGTGCCGCTGGCGTCCTGGGATCGTTCGTGACGGGGCTTTTGATT
GGCTGGGTCGCGTCACTTCTTCGTAAAGCCAAATAG
Translation:
MSGVVAVQVCTAWTSTPEGFMACRELAWQQAYLIPPEAAGYVDILVNGGFSPEAFGIGAAGVLGSFVTGLLI
GWVASLLRKAK*
AnnotationID:5287GeneID:5282
AnnotatorUID: danlee
Modification Date/Time: 2006-04-12 17:05:33
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein of bacteriophage Pf1
Cell Localization:()
Synonyms:PA0722
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
100% identical to orf 83 [Bacteriophage Pf1]
>gb|AAG04111.1|AE004507_10 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
 Length = 83
 Score =  171 bits (432), Expect = 1e-42
 Identities = 83/83 (100%), Positives = 83






 
Structural Features:






   
Genomic Context:
cluster of genes from bacteriophage Pf1






   
Comment:


















    ReferenceID:10564




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27710




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5282
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7684
                           PA0722_tr
                           translation of PA0722
                           83
                           99.99
                           99.99
                           0
                           432.0
     

     
     
195547
                           gb|AAG04111.1|AE004507_10
                           (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
                           83
                           99.99
                           99.99
                           0
                           432.0
     

     






      

          
GC ORFID: 48284How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0722Glimmer Score: 

          
Start: 602545Stop: 602796

          
Length: 252


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0722 translation of PA0722Homolog Bit Score 171.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCAGGCGTTGTCGCTGTGCAGGTGTGTACCGCGTGGACCTCGACTCCCGAGGGCTTCATGGCGTGTCGC 
GAACTCGCATGGCAACAGGCCTACCTGATTCCGCCCGAGGCCGCTGGATACGTGGACATCCTGGTCAACGGT 
GGTTTCTCCCCGGAAGCCTTCGGCATCGGTGCCGCTGGCGTCCTGGGATCGTTCGTGACGGGGCTTTTGATT 
GGCTGGGTCGCGTCACTTCTTCGTAAAGCCAAATAG