ViewGene

Locus Name:
GeneID:
Location:

GeneID:5279
TrivialName: PA14_61010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61010
PAO1 Ortholog Locus:PA4611
Sequence Length:255
Protein Length:84
Start: 5441963
Stop: 5441709
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07999.1|AE004875_5 (AE004875) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 83/84 (98%), Positives = 83/84 (98%)
Sequence:
ATGCCGCTCGAGCAACATCCGCTTTCCCGGGAGTTTCCGGATTTTCATGCCGAACTGAAGCAACTTCATGGC
AACGACGCCCACTTCACTCGCCTGGCGACGGACTATGAGAGCCTCGACAAGCGCATCTACGAGGTCGAGGGC
GGTCGCGAACCCCTCGACGACCTGGCGCTGCAGGGGTTGAAGCAGCAACGGGTGCAACTCAAGGACGAAATC
GCCGAGAGGCTGAGGAAGGCCAACGGAAAAGGCCATTGA
Translation:
MPLEQHPLSREFPDFHAELKQLHGNDAHFTRLATDYESLDKRIYEVEGGREPLDDLALQGLKQQRVQLKDEI
AERLRKANGKGH*
AnnotationID:5284GeneID:5279
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4611
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10558
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27704
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31613
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5279_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5279

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7681 PA4611_tr translation of PA4611 84 98.80 98.80 0 436.0
195503 gb|AAG07999.1|AE004875_5 (AE004875) hypothetical protein PA4611 [Pseudomonas aeruginosa PAO1] 84 98.80 98.80 0 436.0
GC ORFID: 48281How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4611Glimmer Score:
Start: 4705643Stop: 4705389
Length: 255
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4611 translation of PA4611Homolog Bit Score 172.0
Other Homologs:
GC ORF Sequence
ATGCCGCTCGAGCAACATCCGCTTTCCCGGGAGTTTCCGGATTTTCATGCCGAACTGAAGCAACTTCATGGC
AACGACGCCCACTTCACTCGCCTGGCGACGGACTATGAGAGCCTCGACAAGCGCATCTACGAGGTCGAGGGC
GGTCGCGAACCCCTCGACGACCTGGCGCTGCAGGGGTTGAAGCAGCAACGGGTGCAACTCAAGGACGAAATC
GCCGAGAGGCTGAGGAAGGCCAACGGAAAAGGCCATTGA