ViewGene
Locus Name:
GeneID:
Location:

GeneID:5277
TrivialName: PA14_39080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39080
PAO1 Ortholog Locus:
Sequence Length:234
Protein Length:77
Start: 3483653
Stop: 3483420
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05356.1|AE004623_6 (AE004623) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 76/77 (98%), Positives = 77/77 (100%)
Sequence:
ATGACCGACACTCCCGACGATCGAACCGGAGATGCTTCCGGCCTGTCGAAGCGCCAGGCATTCCATCGGCAG
CACCGGCAACGGGCGGAGGAAGAGGCGCGGCGCCTGCTCGACGCCCGCGCCGAACAGGGCGGCCGCTGGCTG
GACTGGGTCGCGGGCCAGCTCTACCTCCTGCGTCCGCCGGAATACGCGGCCATGGTGCGTCGCGAACTGCAG
CGCCTGAGCGGCGACTGA
Translation:
MTDTPDDRTGDASGLSKRQAFHRQHRQRAEEEARRLLDARAEQGGRWLDWVAGQLYLLRPPEYAAMVRRELQ
RLSGD*
AnnotationID:5282GeneID:5277
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10554




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27700




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5277
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7679
                           PA1968_tr
                           translation of PA1968
                           85
                           89.41
                           90.58
                           8
                           400.0
     

     
     
195501
                           gb|AAG05356.1|AE004623_6
                           (AE004623) hypothetical protein PA1968 [Pseudomonas aeruginosa PAO1]
                           85
                           89.41
                           90.58
                           8
                           400.0
     

     






      

          
GC ORFID: 48279How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1968Glimmer Score: 

          
Start: 1470258Stop: 1470491

          
Length: 234


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1968 translation of PA1968Homolog Bit Score 172.0

          
Other Homologs:  t_PA1968 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACACTCCCGACGATCGAACCGGAGATGCTTCCGGCCTGTCGAAGCGCCAGGCATTCCATCGGCAG 
CACCGGCAACGGGCGGAGGAAGAGGCGCGGCGCCTGCTCGACGCCCGCGCCGAACAGGGCGGCCGCTGGCTG 
GACTGGGTCGCGGGCCAGCTCTACCTCCTGCGTCCGCCGGAATACGCGGCCATGGTGCGTCGCGAACTGCAG 
CGCCTGAGCGGCGACTGA