ViewGene
Locus Name:
GeneID:
Location:

GeneID:5276
TrivialName: PA14_50690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50690
PAO1 Ortholog Locus:PA1058
Sequence Length:258
Protein Length:85
Start: 4502715
Stop: 4502458
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04447.1|AE004537_12 (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 84/85 (98%), Positives = 85/85 (100%)
Sequence:
GTGATCCCGCTGTGCCTGGCGCTGCTCGGCCTGGCCCTGTTGCTGACCCTGGCGCGCCTGGTCAAGGGGCCG
TGCCTGCCGGACCGGGCTCTGGCGCTGGACACCCTCTACGTGAACGCCATCGCCCTGCTGGTGCTGTACGGC
ATCTGGCGCGACAGCGACCTGTTCTTCGAGGCGGCGCTGCTGATCGCGGTGCTCGGTTTCGTCGGTACGGTG
GCGGTGGCCAAATACATGCTGCGCGGAGACATCATCGAATGA
Translation:
MIPLCLALLGLALLLTLARLVKGPCLPDRALALDTLYVNAIALLVLYGIWRDSDLFFEAALLIAVLGFVGTV
AVAKYMLRGDIIE*
AnnotationID:5281GeneID:5276
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 15:03:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1058, phaF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2212
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2212, MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit [Inorganic ion 
transport and metabolism]
        CD-Length = 89 residues,  94.4% aligned
        Score = 64.7 bits (158), Expect = 1e-12






   
Genomic Context:
This is in a cluster of genes homologous to the phaABCDEFG locus of Rhizobium 
meliloti (but the PAO1/PA14 locus lacks a phaB homolog). 







   
Comment:


















    ReferenceID:15294




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27698




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32212




  
Author/Investigator(s):
        Putnoky P, Kereszt A, Nakamura T, Endre G, Grosskopf E, Kiss P, Kondorosi A.





  
Title:
        The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system.




  
PubMed:
        98343795


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1091-101.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5276
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7678
                           PA1058_tr
                           translation of PA1058
                           89
                           95.50
                           95.50
                           4
                           417.0
     

     
     
195500
                           gb|AAG04447.1|AE004537_12
                           (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           89
                           95.50
                           95.50
                           4
                           417.0
     

     






      

          
GC ORFID: 48278How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1058Glimmer Score: 

          
Start: 451193Stop: 451450

          
Length: 258


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1058 translation of PA1058Homolog Bit Score 172.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGATCCCGCTGTGCCTGGCGCTGCTCGGCCTGGCCCTGTTGCTGACCCTGGCGCGCCTGGTCAAGGGGCCG 
TGCCTGCCGGACCGGGCTCTGGCGCTGGACACCCTCTACGTGAACGCCATCGCCCTGCTGGTGCTGTACGGC 
ATCTGGCGCGACAGCGACCTGTTCTTCGAGGCGGCGCTGCTGATCGCGGTGCTCGGTTTCGTCGGTACGGTG 
GCGGTGGCCAAATACATGCTGCGCGGAGACATCATCGAATGA