ViewGene

Locus Name:
GeneID:
Location:

GeneID:5273
TrivialName: PA14_40610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40610
PAO1 Ortholog Locus:PA1849
Sequence Length:243
Protein Length:80
Start: 3624953
Stop: 3625195
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05238.1|AE004611_3 (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 77/80 (96%), Positives = 77/80 (96%)
Sequence:
ATGCTGGAACTGCGCCCCAACTGCGAGTGCTGCGACCGCGACCTGCCCGGCGACAGCGGCGACGCGCTGATC
TGCACCTTCGAGTGCACCTTCTGCCGCGATTGCGCGACGACCCGCCTGGGCGGCCAATGCCCGAACTGCGGC
GGCGAACTGCTGGCCCGGCCAAGGCGTCCGCGGGATGCGCTGGTCCGTCAGCCCGCCTCCAGCCGGCGCGTC
GTCAGGCCCGGCGGTTGTCCGGAGTGA
Translation:
MLELRPNCECCDRDLPGDSGDALICTFECTFCRDCATTRLGGQCPNCGGELLARPRRPRDALVRQPASSRRV
VRPGGCPE*
AnnotationID:5278GeneID:5273
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 05:05:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1849
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL83826.1|AF347070_3 (AF347070) urease-associated hypothetical protein [Rhizobium
          leguminosarum bv. viciae]
          Length = 83

 Score =  111 bits (278), Expect = 8e-25
 Identities = 49/78 (62%), Positives = 57/78 (73%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:10546
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27692
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37055
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5273_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5273

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7675 PA1849_tr translation of PA1849 80 96.25 96.25 0 440.0
195468 gb|AAG05238.1|AE004611_3 (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 80 96.25 96.25 0 440.0
195469 emb|CAC47053.1| (AL591790) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] 84 69.04 77.38 4 330.0
195470 gb|AAB30135.1| (S69145) orf3 3' of ureA [Sinorhizobium meliloti] 84 69.04 77.38 4 330.0
195471 emb|CAD18309.1| (AL646083) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 82 65.85 71.95 2 307.0
GC ORFID: 48275How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1849Glimmer Score:
Start: 1328957Stop: 1328715
Length: 243
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1849 translation of PA1849Homolog Bit Score 174.0
Other Homologs: t_PA1849 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGGAACTGCGCCCCAACTGCGAGTGCTGCGACCGCGACCTGCCCGGCGACAGCGGCGACGCGCTGATC
TGCACCTTCGAGTGCACCTTCTGCCGCGATTGCGCGACGACCCGCCTGGGCGGCCAATGCCCGAACTGCGGC
GGCGAACTGCTGGCCCGGCCAAGGCGTCCGCGGGATGCGCTGGTCCGTCAGCCCGCCTCCAGCCGGCGCGTC
GTCAGGCCCGGCGGTTGTCCGGAGTGA