ViewGene
Locus Name:
GeneID:
Location:

GeneID:5272
TrivialName: PA14_47420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47420
PAO1 Ortholog Locus:PA1298
Sequence Length:276
Protein Length:91
Start: 4225636
Stop: 4225361
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04687.1|AE004559_6 (AE004559) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
GTGGCCCATACCATCCATGGGAAGAAGAAGCTCCTGGCGCGGGTGCGCCGCATCGCCGGGCAGACCCGGGCG
CTGGAGCAGGCGCTGGAAGAGGGCAGCGAATGCGCGGCGGTGCTGCAGCAGATCGCGGCGATCCGCGGTGCG
GTGAACGGCCTGATGAACGAAGTGCTGGAGGGGCACATCCGCGAACACCTCGGCGCCGAGCAGGCGAGCGCG
GAACAGCGTCGCGAAGACCTGGAACTGGTGGTGACCGCGCTGCGTTCCTACCTGAAGTAG
Translation:
MAHTIHGKKKLLARVRRIAGQTRALEQALEEGSECAAVLQQIAAIRGAVNGLMNEVLEGHIREHLGAEQASA
EQRREDLELVVTALRSYLK*
AnnotationID:5277GeneID:5272
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 20:08:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1298
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL21899.1| (AE008839) putative cytoplasmic protein [Salmonella typhimurium
          LT2]
          Length = 90

 Score =  100 bits (250), Expect = 1e-21
 Identities = 51/91 (56%), Positives = 68/91 (74%), Gaps = 1/91 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15290




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27690




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36495




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:5272_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5272
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7674
                           PA1298_tr
                           translation of PA1298
                           91
                           99.99
                           99.99
                           0
                           442.0
     

     
     
195463
                           gb|AAG04687.1|AE004559_6
                           (AE004559) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           91
                           98.90
                           99.99
                           0
                           439.0
     

     
     
195464
                           gb|AAM35622.1|
                           (AE011703) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           91
                           59.34
                           75.82
                           0
                           257.0
     

     
     
195466
                           gb|AAM42660.1|
                           (AE012457) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           91
                           59.34
                           74.72
                           0
                           252.0
     

     
     
195465
                           gb|AAQ61157.1|
                           (AE016922) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           91
                           58.24
                           74.72
                           1
                           257.0
     

     






      

          
GC ORFID: 48274How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1298Glimmer Score: 

          
Start: 728273Stop: 728548

          
Length: 276


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1298 translation of PA1298Homolog Bit Score 174.0

          
Other Homologs:  t_PA1298 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCCCATACCATCCATGGGAAGAAGAAGCTCCTGGCGCGGGTGCGCCGCATCGCCGGGCAGACCCGGGCG 
CTGGAGCAGGCGCTGGAAGAGGGCAGCGAATGCGCGGCGGTGCTGCAGCAGATCGCGGCGATCCGCGGTGCG 
GTGAACGGCCTGATGAACGAAGTGCTGGAGGGGCACATCCGCGAACACCTCGGCGCCGAGCAGGCGAGCGCG 
GAACAGCGTCGCGAAGACCTGGAACTGGTGGTGACCGCGCTGCGTTCCTACCTGAAGTAG