ViewGene

Locus Name:
GeneID:
Location:

GeneID:5269
TrivialName: PA14_08940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08940
PAO1 Ortholog Locus:PA4254
Sequence Length:267
Protein Length:88
Start: 763894
Stop: 764160
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07642.1|AE004841_20 (AE004841) 30S ribosomal protein S17 [Pseudomonas aeruginosa PAO1]
Identities = 88/88 (100%), Positives = 88/88 (100%)
Sequence:
ATGGCTGAAGCTCAGAAAACCGTCCGTACGCTGACCGGCCGCGTCGTCAGCGACAAAATGGACAAGACCGTC
ACCGTACTGATCGAGCGTCGCGTCAAGCACCCGATCTACGGCAAATACGTCAAGCGTTCGACCAAACTGCAC
GCACACGACGAATCCAATCAGTGCCGCATTGGTGACCTGGTCACCATTCGCGAAACCCGTCCGCTGGCCAAG
ACCAAGGCCTGGACCCTGGTTGATATCGTTGAACGCGCGGTGGAAGTCTAA
Translation:
MAEAQKTVRTLTGRVVSDKMDKTVTVLIERRVKHPIYGKYVKRSTKLHAHDESNQCRIGDLVTIRETRPLAK
TKAWTLVDIVERAVEV*
AnnotationID:5274GeneID:5269
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 11:11:16
Gene Name:rpsQ
Confidence Code:2
GeneProduct:30S ribosomal protein S17
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0186,pfam00366
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54177.1| (AE016858) ribosomal protein S17 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 88

 Score =  163 bits (412), Expect = 2e-40
 Identities = 79/88 (89%), Positives = 85/88 (96%)

>gb|AAN66093.1|AE016238_11 (AE016775) ribosomal protein S17 [Pseudomonas putida KT2440]
          Length = 88

 Score =  161 bits (408), Expect = 6e-40
 Identities = 77/88 (87%), Positives = 86/88 (97%)

>gb|AAN53325.1|AE015473_12 (AE015473) ribosomal protein S17 [Shewanella oneidensis MR-1]
          Length = 82

 Score =  127 bits (318), Expect = 2e-29
 Identities = 56/78 (71%), Positives = 70/78 (89%)

Structural Features:
COG0186, RpsQ, Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
CD-Length = 87 residues, 100.0% aligned
Score =  106 bits (265), Expect = 8e-25
Identities = 52/87 (59%), Positives = 66/87 (75%)

pfam00366, Ribosomal_S17, Ribosomal protein S17.
CD-Length = 69 residues, 100.0% aligned
Score = 84.2 bits (208), Expect = 3e-18
Identities = 38/69 (55%), Positives = 49/69 (71%)
Genomic Context:
Comment:
ReferenceID:10538
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27684
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36537
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5269_cdd.html
URL:
ReferenceID:36731
Author/Investigator(s): Zurawski G, Zurawski SM.
Title: Structure of the Escherichia coli S10 ribosomal protein operon.
PubMed: 3892488
MedLine:
Source:
Nucleic Acids Res. 1985 Jun 25;13(12):4521-6.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3892488
Homologs By Global Alignment
Gene ID:5269

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7672 PA4254_tr translation of PA4254 88 99.99 99.99 0 444.0
195411 gb|AAG07642.1|AE004841_20 (AE004841) 30S ribosomal protein S17 [Pseudomonas aeruginosa PAO1] 88 99.99 99.99 0 444.0
195412 gb|AAO54177.1| (AE016858) ribosomal protein S17 [Pseudomonas syringae pv. tomato str. DC3000] 88 89.77 96.59 0 412.0
195413 gb|AAN66093.1|AE016238_11 (AE016775) ribosomal protein S17 [Pseudomonas putida KT2440] 88 87.50 97.72 0 408.0
195431 dbj|BAC58529.1| (AP005073) ribosomal protein S17 [Vibrio parahaemolyticus] 88 65.90 80.68 4 298.0
GC ORFID: 48271How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4254Glimmer Score:
Start: 4190045Stop: 4189779
Length: 267
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4254 translation of PA4254Homolog Bit Score 175.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5194 (ORF: BLASTX 163.0), t_PA4254 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTGAAGCTCAGAAAACCGTCCGTACGCTGACCGGCCGCGTCGTCAGCGACAAAATGGACAAGACCGTC
ACCGTACTGATCGAGCGTCGCGTCAAGCACCCGATCTACGGCAAATACGTCAAGCGTTCGACCAAACTGCAC
GCACACGACGAATCCAATCAGTGCCGCATTGGTGACCTGGTCACCATTCGCGAAACCCGTCCGCTGGCCAAG
ACCAAGGCCTGGACCCTGGTTGATATCGTTGAACGCGCGGTGGAAGTCTAA