ViewGene
Locus Name:
GeneID:
Location:

GeneID:5268
TrivialName: PA14_38270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38270
PAO1 Ortholog Locus:PA2030
Sequence Length:258
Protein Length:85
Start: 3413293
Stop: 3413550
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05418.1|AE004629_7 (AE004629) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 83/85 (97%), Positives = 85/85 (100%)
Sequence:
ATGATCCGCTGTCGCAACTGTGGCGAACGCCCAGCCAGCGAAGGGCATATCTGTATGGTCTGCAAGCGCCGA
TCCGACGTCGACCCATACAAGGCGCTGATCGCCATGGCCCTGCTGGTCTACTGCGGCGTCAGCCTGGCGGCC
TACCTCAAGCCACATATGCCGTCACCGCCGCCTACCGCCGGCAGCAGCGTCCAGCCCGCCGAGGAGCTGGCC
CAGCGCGCCCGCCAGGCCACCCTGGAACAGCGCGGCATCTGA
Translation:
MIRCRNCGERPASEGHICMVCKRRSDVDPYKALIAMALLVYCGVSLAAYLKPHMPSPPPTAGSSVQPAEELA
QRARQATLEQRGI*
AnnotationID:5273GeneID:5268
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2030
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10536




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27682




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5268
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7671
                           PA2030_tr
                           translation of PA2030
                           85
                           97.64
                           99.99
                           0
                           444.0
     

     
     
195410
                           gb|AAG05418.1|AE004629_7
                           (AE004629) hypothetical protein PA2030 [Pseudomonas aeruginosa PAO1]
                           85
                           97.64
                           99.99
                           0
                           444.0
     

     






      

          
GC ORFID: 48270How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2030Glimmer Score: 

          
Start: 1540617Stop: 1540360

          
Length: 258


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2030 translation of PA2030Homolog Bit Score 175.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATCCGCTGTCGCAACTGTGGCGAACGCCCAGCCAGCGAAGGGCATATCTGTATGGTCTGCAAGCGCCGA 
TCCGACGTCGACCCATACAAGGCGCTGATCGCCATGGCCCTGCTGGTCTACTGCGGCGTCAGCCTGGCGGCC 
TACCTCAAGCCACATATGCCGTCACCGCCGCCTACCGCCGGCAGCAGCGTCCAGCCCGCCGAGGAGCTGGCC 
CAGCGCGCCCGCCAGGCCACCCTGGAACAGCGCGGCATCTGA