ViewGene
Locus Name:
GeneID:
Location:

GeneID:5267
TrivialName: PA14_60040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60040
PAO1 Ortholog Locus:
Sequence Length:273
Protein Length:90
Start: 5346464
Stop: 5346736
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84139.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 90/90 (100%), Positives = 90/90 (100%)
Sequence:
ATGGCAACGCGAAACGTCGTCCTTCCCGATCCGCTGGAGCAGGATATCAACGAGCTGGTGGAGACCGGCCGC
TATCAGAATCGCAGCGAAGTCATCCGGGCAGGCTTGCGCCTGCTGCTGCAACAGGAAGCCCAGAATAGCGCC
AAGCTCGAAGCCCTCCGCAACGCAACATCCAGTGGGCTGATGCAACTGGAGCGCGGCGAGTACGACGAGATC
ACCAGCGACGACCTGGCCCAATACCTCGACGAGCTCGGCAACCAGGCGAGCCACTGA
Translation:
MATRNVVLPDPLEQDINELVETGRYQNRSEVIRAGLRLLLQQEAQNSAKLEALRNATSSGLMQLERGEYDEI
TSDDLAQYLDELGNQASH*
AnnotationID:5272GeneID:5267
AnnotatorUID: diggins
Modification Date/Time: 2006-02-04 20:08:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3609
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3609, Predicted transcriptional regulators containing the 
CopG/Arc/MetJ DNA-binding domain [Transcription].
CD-Length = 89 residues,  85.4% aligned
Score = 55.5 bits (133), Expect = 1e-09
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 3/79 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10534




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17067




  
Author/Investigator(s):
        





  
Title:
        CDD-search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-5267.htm


    		




 
URL:

















    ReferenceID:17068




  
Author/Investigator(s):
        





  
Title:
        CDD-search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-5267.htm


    		




 
URL:

















    ReferenceID:27680




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5267
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
195408
                           gb|AAP84139.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           90
                           99.99
                           99.99
                           0
                           445.0
     

     
     
195409
                           gb|AAP94683.1|
                           (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa]
                           90
                           85.55
                           87.77
                           11
                           384.0
     

     






      

          
GC ORFID: 48269How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL012Glimmer Score: 

          
Start: 4610143Stop: 4610415

          
Length: 273


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL012 90 Homolog: AGR_C_2413p / Hypothetical protein / Agrobacterium tumefaciens / C58 (AAK87103) translation of RL012Homolog Bit Score 176.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCAACGCGAAACGTCGTCCTTCCCGATCCGCTGGAGCAGGATATCAACGAGCTGGTGGAGACCGGCCGC 
TATCAGAATCGCAGCGAAGTCATCCGGGCAGGCTTGCGCCTGCTGCTGCAACAGGAAGCCCAGAATAGCGCC 
AAGCTCGAAGCCCTCCGCAACGCAACATCCAGTGGGCTGATGCAACTGGAGCGCGGCGAGTACGACGAGATC 
ACCAGCGACGACCTGGCCCAATACCTCGACGAGCTCGGCAACCAGGCGAGCCACTGA