ViewGene
Locus Name:
GeneID:
Location:

GeneID:5266
TrivialName: PA14_62720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62720
PAO1 Ortholog Locus:PA4741
Sequence Length:270
Protein Length:89
Start: 5597851
Stop: 5597582
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08127.1|AE004888_2 (AE004888) 30S ribosomal protein S15 [Pseudomonas aeruginosa PAO1]
Identities = 89/89 (100%), Positives = 89/89 (100%)
Sequence:
ATGGCACTGAGCGTTGAAGAAAAAGCGCAGATCGTTAACGAATACAAGCAAGCTGAAGGCGACACCGGTTCC
CCGGAAGTGCAGGTAGCCCTGCTGTCCGCCAACATCAACAAGCTGCAGGATCACTTCAAGGCCAACGGCAAG
GATCACCATTCCCGCCGTGGTCTGATCCGTATGGTTAACCAGCGCCGTAAGCTGCTGGACTACCTGAAGGGC
AAAGACGTGTCTCGCTACACTGCCCTGATCGGCCGTCTGGGTCTGCGTCGCTAA
Translation:
MALSVEEKAQIVNEYKQAEGDTGSPEVQVALLSANINKLQDHFKANGKDHHSRRGLIRMVNQRRKLLDYLKG
KDVSRYTALIGRLGLRR*
AnnotationID:5271GeneID:5266
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 08:08:23
Gene Name:rpsO
Confidence Code:2
GeneProduct:30S ribosomal protein S15
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00312
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57936.1| (AE016872) ribosomal protein S15 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 89

 Score =  163 bits (413), Expect = 2e-40
 Identities = 82/89 (92%), Positives = 86/89 (96%)

>gb|AAN70282.1|AE016668_8 (AE016791) ribosomal protein S15 [Pseudomonas putida KT2440]
          Length = 107

 Score =  159 bits (401), Expect = 4e-39
 Identities = 80/89 (89%), Positives = 84/89 (94%)

>dbj|BAC60716.1| (AP005081) ribosomal protein S15 [Vibrio parahaemolyticus]
          Length = 89

 Score =  131 bits (330), Expect = 7e-31
 Identities = 66/89 (74%), Positives = 77/89 (86%)








 
Structural Features:
pfam00312, Ribosomal_S15, Ribosomal protein S15.
CD-Length = 83 residues,  97.6% aligned
Score = 86.1 bits (213), Expect = 7e-19
Identities = 42/81 (51%), Positives = 61/81 (75%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10532




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27678




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36556




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5266_cdd.html


    		




 
URL:

















    ReferenceID:36607




  
Author/Investigator(s):
        Takata R, Mukai T, Aoyagi M, Hori K.





  
Title:
        Nucleotide sequence of the gene for Escherichia coli ribosomal protein S15 (rpsO).




  
PubMed:
        6394953


MedLine:
        




    
Source:
Mol Gen Genet. 1984;197(2):225-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6394953









           
Homologs By Global Alignment 

           

       



     
Gene ID:5266
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7670
                           PA4741_tr
                           translation of PA4741
                           89
                           99.99
                           99.99
                           0
                           447.0
     

     
     
195328
                           gb|AAG08127.1|AE004888_2
                           (AE004888) 30S ribosomal protein S15 [Pseudomonas aeruginosa PAO1]
                           89
                           99.99
                           99.99
                           0
                           447.0
     

     
     
195329
                           gb|AAO57936.1|
                           (AE016872) ribosomal protein S15 [Pseudomonas syringae pv. tomato str. DC3000]
                           89
                           92.13
                           96.62
                           0
                           413.0
     

     
     
195331
                           emb|CAA77047.1|
                           (Y18132) ribosomal protein S15 [Pseudomonas putida]
                           89
                           78.65
                           83.14
                           0
                           334.0
     

     
     
195330
                           gb|AAN70282.1|AE016668_8
                           (AE016791) ribosomal protein S15 [Pseudomonas putida KT2440]
                           107
                           74.76
                           78.50
                           18
                           401.0
     

     






      

          
GC ORFID: 48268How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4741Glimmer Score: 

          
Start: 4861531Stop: 4861262

          
Length: 270


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4741 translation of PA4741Homolog Bit Score 176.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5496 (ORF: BLASTX 163.0), t_PA4741 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACTGAGCGTTGAAGAAAAAGCGCAGATCGTTAACGAATACAAGCAAGCTGAAGGCGACACCGGTTCC 
CCGGAAGTGCAGGTAGCCCTGCTGTCCGCCAACATCAACAAGCTGCAGGATCACTTCAAGGCCAACGGCAAG 
GATCACCATTCCCGCCGTGGTCTGATCCGTATGGTTAACCAGCGCCGTAAGCTGCTGGACTACCTGAAGGGC 
AAAGACGTGTCTCGCTACACTGCCCTGATCGGCCGTCTGGGTCTGCGTCGCTAA