ViewGene

Locus Name:
GeneID:
Location:

GeneID:5264
TrivialName: PA14_54470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54470
PAO1 Ortholog Locus:PA0760
Sequence Length:255
Protein Length:84
Start: 4829337
Stop: 4829083
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04149.1|AE004511_2 (AE004511) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 84/84 (100%), Positives = 84/84 (100%)
Sequence:
ATGGCAGATGAAACCGAACTGAAACGACTCTACTGGCACAGCCGTCGCGGCATGCTGGAACTGGATGTGCTG
CTGGTGCCTTTCGTGCAGGAGGTTTACCCGGGCCTGGACGCCGAGGACCAGGCGCGCTTCCGCAAGCTGCTG
GAGTGCGAGGACCAGGACATGTTCGGTTGGTTCATGCAGCGCGGCGAGCCGGAAGACGCCGACCTGCGGCGG
ATGGTGCGGATGATCCTGGACCGTGTCCAGCCGGATTGA
Translation:
MADETELKRLYWHSRRGMLELDVLLVPFVQEVYPGLDAEDQARFRKLLECEDQDMFGWFMQRGEPEDADLRR
MVRMILDRVQPD*
AnnotationID:5269GeneID:5264
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 13:01:46
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0760
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10528
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27674
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5264

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7668 PA0760_tr translation of PA0760 84 99.99 99.99 0 446.0
195324 gb|AAG04149.1|AE004511_2 (AE004511) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 84 99.99 99.99 0 446.0
195325 gb|AAO57683.1| (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 84 75.00 85.71 0 337.0
195326 gb|AAN67046.1|AE016333_7 (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440] 84 70.23 83.33 0 320.0
GC ORFID: 48266How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0760Glimmer Score:
Start: 124570Stop: 124824
Length: 255
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0760 translation of PA0760Homolog Bit Score 176.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2701 (ORF: BLASTX 134.0), t_PA0760 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAGATGAAACCGAACTGAAACGACTCTACTGGCACAGCCGTCGCGGCATGCTGGAACTGGATGTGCTG
CTGGTGCCTTTCGTGCAGGAGGTTTACCCGGGCCTGGACGCCGAGGACCAGGCGCGCTTCCGCAAGCTGCTG
GAGTGCGAGGACCAGGACATGTTCGGTTGGTTCATGCAGCGCGGCGAGCCGGAAGACGCCGACCTGCGGCGG
ATGGTGCGGATGATCCTGGACCGTGTCCAGCCGGATTGA