ViewGene
Locus Name:
GeneID:
Location:

GeneID:5263
TrivialName: PA14_59560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59560
PAO1 Ortholog Locus:
Sequence Length:267
Protein Length:88
Start: 5301173
Stop: 5301439
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84186.1| (AY273869) transposase [Pseudomonas aeruginosa]
Identities = 88/88 (100%), Positives = 88/88 (100%)
Sequence:
ATGCGCCAACGAAGCTCTTACCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAATGCCTGCAACCTGGGGCA
ACGGTGTCCAGTGTCGCCATCAGCCACGGCATCAACGCCAATGTCATCCGCAAATGGCTGACGCTTTATCGA
GACCAGCCCGTACCAGCCTCGTTACCAGCCTTTGTCCCGCTGAAGGCCACCCCTAAACGGCCAGCCGAAACG
TCAGTGCTCATTGAACTGCCCATGGCCGGGCAAATGATCACGGTGAAATAG
Translation:
MRQRSSYPKPFKAQVVQECLQPGATVSSVAISHGINANVIRKWLTLYRDQPVPASLPAFVPLKATPKRPAET
SVLIELPMAGQMITVK*
AnnotationID:5268GeneID:5263
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 11:11:34
Gene Name:
Confidence Code:3
GeneProduct:putative transposase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):DNA replication, recombination, modification and repair
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69573.1|AE016591_1 (AE016788) ISPpu14, transposase Orf1 [Pseudomonas putida KT2440]
          Length = 106

 Score =  159 bits (403), Expect = 2e-39
 Identities = 78/88 (88%), Positives = 82/88 (93%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10526




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27672




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38291




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5263_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5263
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
195317
                           gb|AAP84186.1|
                           (AY273869) transposase [Pseudomonas aeruginosa]
                           88
                           99.99
                           99.99
                           0
                           448.0
     

     
     
195318
                           gb|AAN69573.1|AE016591_1
                           (AE016788) ISPpu14, transposase Orf1 [Pseudomonas putida KT2440]
                           106
                           73.58
                           77.35
                           18
                           403.0
     

     
     
195319
                           gb|AAN70013.1|AE016640_1
                           (AE016790) ISPpu14, transposase Orf1 [Pseudomonas putida KT2440]
                           106
                           73.58
                           77.35
                           18
                           403.0
     

     
     
195320
                           gb|AAN69100.1|AE016543_9
                           (AE016787) ISPpu14, transposase Orf1 [Pseudomonas putida KT2440]
                           106
                           73.58
                           77.35
                           18
                           403.0
     

     
     
195321
                           gb|AAN70962.1|AE016740_5
                           (AE016794) ISPpu14, transposase Orf1 [Pseudomonas putida KT2440]
                           106
                           72.64
                           75.47
                           18
                           400.0
     

     






      

          
GC ORFID: 48265How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL061Glimmer Score: 

          
Start: 4564852Stop: 4565118

          
Length: 267


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL061 88 Homolog: ECs3846 / Putative transposase; recombination-related / E.coli O157:H7 (BAB37269) translation of RL061Homolog Bit Score 177.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCGCCAACGAAGCTCTTACCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAATGCCTGCAACCTGGGGCA 
ACGGTGTCCAGTGTCGCCATCAGCCACGGCATCAACGCCAATGTCATCCGCAAATGGCTGACGCTTTATCGA 
GACCAGCCCGTACCAGCCTCGTTACCAGCCTTTGTCCCGCTGAAGGCCACCCCTAAACGGCCAGCCGAAACG 
TCAGTGCTCATTGAACTGCCCATGGCCGGGCAAATGATCACGGTGAAATAG